Clone Read LE_HBa0166C03_T7_78053

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166C03_T7_78053
Primer
T7
ID from Seq. Facility
LE_HBa_166_C03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
728 trimmed for vector and quality, 793 raw
Sequence
>LE_HBa0166C03_T7_78053 (raw untrimmed)
CCTCGGTACCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTTGATGTCCTTCGATACCCTTTTGTAGATTACATAAGTGAGCTGATTTT
TCTTATACTTGAGGTGTTCTATTCTCTAGAAGGGAAAAGCAACCACCAACTCTACCACATTAGCTTAGATGACAAATCCCATTGTAGCTTCCATTATAGG
AACCACAAAATCTACTTGTCTGCCAATGTTTTTACGGAAACTTCCATCAGTGAGGTTATGTGGTCTTCCCTTAAGTTGTGTGGTGTCTTGTCAGCGGGGA
TTATCTAGGTAACTTTTCTATATGTTGGGATGTCTGTTCTACACTTGTATATAGCATCATCAAACTTGTCTTTCCATTGTTTTTTATAGACTTTTTGGCT
TTATTTGCAGTGTCTGAAGCAATCTTTGTTATAACATCTGCGATCAAGGATGTATGTGGAAAACCTCCAACGGAGAGACTTTTCCTGGATAAGTATGGAA
AGATTTGCTTGTGCCTGGATGAGATTGTGTGGACGGTAAGATAAAATGTCTCTGTGTTGTAACATAAAACAATTTCACATGCTTGAAACTCTCCATCTTC
TCAAGTATTACATTGTTATGAAATTCTTAAAGCTGTTAACATGCTGCTGTCTGGATAATGATATTATTCCGCTTTTTGTATTTTGAAGGGGTTGCTTGAA
AACATTGACAAAGATAGAATCAAGAGACTTGTTAGGTTGAAACCACCCACAGAATTCTGATGAAGATTTTTTTATGCAAAGCTCCTGGGAATC
>LE_HBa0166C03_T7_78053 (trimmed for quality and cloning vector)
AGCTTATTTGATGTCCTTCGATACCCTTTTGTAGATTACATAAGTGAGCTGATTTTTCTTATACTTGAGGTGTTCTATTCTCTAGAAGGGAAAAGCAACC
ACCAACTCTACCACATTAGCTTAGATGACAAATCCCATTGTAGCTTCCATTATAGGAACCACAAAATCTACTTGTCTGCCAATGTTTTTACGGAAACTTC
CATCAGTGAGGTTATGTGGTCTTCCCTTAAGTTGTGTGGTGTCTTGTCAGCGGGGATTATCTAGGTAACTTTTCTATATGTTGGGATGTCTGTTCTACAC
TTGTATATAGCATCATCAAACTTGTCTTTCCATTGTTTTTTATAGACTTTTTGGCTTTATTTGCAGTGTCTGAAGCAATCTTTGTTATAACATCTGCGAT
CAAGGATGTATGTGGAAAACCTCCAACGGAGAGACTTTTCCTGGATAAGTATGGAAAGATTTGCTTGTGCCTGGATGAGATTGTGTGGACGGTAAGATAA
AATGTCTCTGTGTTGTAACATAAAACAATTTCACATGCTTGAAACTCTCCATCTTCTCAAGTATTACATTGTTATGAAATTCTTAAAGCTGTTAACATGC
TGCTGTCTGGATAATGATATTATTCCGCTTTTTGTATTTTGAAGGGGTTGCTTGAAAACATTGACAAAGATAGAATCAAGAGACTTGTTAGGTTGAAACC
ACCCACAGAATTCTGATGAAGATTTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.959074
Expected error %
0.367603
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g15370.1 Score 96 E Value 2e-20 Identity 14.90% Align. Length 347bp (47.66%) Frame 1
68414.m01840 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAG14986.1| Score 98 E Value 2e-19 Identity 15.70% Align. Length 350bp (48.08%) Frame 1
hypothetical protein [Cicer arietinum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_470471.1| Score 97 E Value 4e-19 Identity 15.20% Align. Length 347bp (47.66%) Frame 1
putative chloroplastic RNA-binding protein, with alternative splicing isoforms [Oryza sativa (japonica cultivar-group)] gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative splicing isoforms [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166C03
Clone
Clone name
hba-166c3
LE_HBa0166C03
P166C03
Clone type
BAC
Contamination
none
Estimated length
126,307
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found