Clone Read LE_HBa0164P03_T7_77909

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0164P03_T7_77909
Primer
T7
ID from Seq. Facility
LE_HBa_164_P03-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 909 raw
Sequence
>LE_HBa0164P03_T7_77909 (raw untrimmed)
TATGAGGATCAGCCGTGGGGATGCTTATGTATGACTCAGTGCGCAGTCTGATAGGGATCTCCANCTCACGCTGCTCCCGCCAGGCTGCAATAGATTCTTG
ACACGACACACGCAATGTCAGGTTACCAAATCATGGCACTTAATCTAAATATAGAGACCTCTAATTATATGTCTATCTAATCTCAAAGTATTTACGGATG
TCACATTTCTGCCTTTAACTTTAGATATTATATTGCCGACTATACACACTTCGAATCTTCTATATATGTCGTCTAGAGGTCGGAATTGGATTCTATTTGA
GAGCTCGCTAGAGTAGCAAGAAGAAGATAACATCATCCCGATATATATATTCGTTGCACACAGAACTAGGATAAGTTTTCCTTAAATG
ATTCCGTGACTA
CTAGCTGTAAGTGCATCCTGAACATGGATATTCAGGCGCAAATGGTACTCGAGTGTTGCTATAGTATGTGCTGCAAGCTTTGCTCTCCCTCTCTCTTCTT
GGTCTCTTTCCTCCTATATGTTGTTTTCTTCATCTCANCATTTCTGTGCCACGATCCTTTGATCGTCAGGTTGAATCTACGAGCCCTCTCGCTTTCACGG
ACTACGGACACGATTCCCTTTCCTAACACATTAGACACGATTGACGAGTTGGCATACATCTACACCATATATTGCAGAATACTGACCCTCACATGTGACC
CCTTATCATTCGATGACTTACCATTTATTGTTCCTCTCGTTCCGAGCTTCTGTTTACTACTAACATTACATTAAACCCACATGCTCCTCCTTGTCTCTGT
CTCGCCTATGATCGTGCGTACTCNCACTCTCCTCCTTCGCTCGTTCTTTTCTCCATCGCACTCGCACGACATCAATCTCGTGTCTCATATGCCCTGACTC
CTACACAAA
>LE_HBa0164P03_T7_77909 (trimmed for quality and cloning vector)
ATTCCG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.08982
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0164P03
Clone
Clone name
hba-164p3
LE_HBa0164P03
P164P03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found