Clone Read LE_HBa0164P03_SP6_77908

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0164P03_SP6_77908
Primer
SP6
ID from Seq. Facility
LE_HBa_164_P03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
4 trimmed for vector and quality, 1683 raw
Sequence
>LE_HBa0164P03_SP6_77908 (raw untrimmed)
GCGATCAGTGTGGAAGGCCATGGAATATATTCATTGTTGTGTTTGTCTAATTTTAGTGATAGTAAAAGAAGTTTCTATGCGATAATGTTNCTTGAGTAAA
GACAACACATAGTAGCATTGAAGTGAACATTAAACAGTAGGGCTCTTTTTAATATAGATNATGCNGATGTGTTATTATGTNAAGGTCATATNAGTNTTAA
GGTAGCAAGGGTACCTCTTCTTTAATAGAGGTTGCAGATNTGAAAGAATGTAAGAGAANTTGTAGTGNCTGTACNCATGTAAGTTATAGAATGTATGACG
TGTTATGGGNTGATAATATACTATCAATATATCAGAAATAAAATATATCTCTTCTTTGCAAATATNGAGAAACATATAGAAGGAGTNTCGTTATGATNAC
GNATTACATGATCTAAGAGAAGTTTGTATATANTGGCTGTACATAGATTATTGTATGTAACATATGTATACTAGTGGTTGGGAATTCAAAGATGGACATC
CTAGAAGTTATAATACCTTANTGATACTGTATTAAGCTACAGAGACTTANTGTCGTAGTGATTTCGTTATGATTTAGTANCTGATATGAGGTTGAGTCAG
TTACATATCATATTGAGGATTATAATANGCTGTTATGAGTCATACCGTTATACTATATACATGTTGGACTCTGTGGAGAGTAAGTATGATGTTGATATAT
GGATCGTCTATCGCTAGAGATATGGATGATATTGTAGAGATAGACATGATGATAGTCACATGTTGATGATAGAATTGTATGCACTAATTAGTATACTCAT
ATTACATACTGAGATAGTGTGTTATGATGATAGTATGATCTCGCTATGATTGTGATACGANTGTATGCGNANGTCCATGATGCNANCAGTGTAGTCGTTG
TCAATAATGCGTCTATATTACTGATAAGTTACTGCTCATCTAACGTGATATTGTAAAGTATGATGGTAAGGTTATTGATTAGTGTTGANANCGTTANAGA
TGTGCTATGGATATATGTGATACATGTATGACTCGCATAAGTGTAACTTGTGCAATCTACTGAGTGTCGTAGAGTGCTCAGATAATCAGATANGATGGAA
ATTAGAGATATAGANATGGTTGAACAATGAGNACAGGATACAAATGATGAATGTGACATGACTGGNAGGGACTGATGNGTTGTGTTGAACGATGTNGCTT
NATGTGATATTCTTGGACTCGTGCNGATGATACGTCTAGTGTTGTNGTGTATGGTATGCATGTGCTGTAGTTNTCACAGCAGCTTGACTGATGTGTGACG
TCACGTGTTGTATGTAACATATGTATCTCATTCTAATGTATGTGTGCAGATTACTGTATCTGTATGACTGTAAATTAGCATGTTACGAATATATGAATAA
AAGTNANTGATTGATANAATNGTNTCTGAATANAATNAGTTTATCGATGTTAATATGGTGACTGTGNAGATGNCTGNATGCTATATACAAGATGAANGAA
GCAGAACAGCGGCTGTATGAGANGACCTGAAAAGATGACGTCACATATGTTGATATGAACGAGTTATGCTNGATGTATGTAGGACGGCGAANCGAGGGTA
NTATTGTAGTGACTGCTCGAGATCGTGAGTGTGTGATGTGACTTGTGGTTACAGATACAATTATGTATTTTATGAGATTCATN
>LE_HBa0164P03_SP6_77908 (trimmed for quality and cloning vector)
TGTA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.85966
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0164P03
Clone
Clone name
hba-164p3
LE_HBa0164P03
P164P03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found