Clone Read LE_HBa0147E11_SP6_72788

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0147E11_SP6_72788
Primer
SP6
ID from Seq. Facility
LE_HBa_147_E11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1574 raw
Sequence
>LE_HBa0147E11_SP6_72788 (raw untrimmed)
ATTGCCACATCACTCACATCTACTAGTTTATCAGTTAGGATATACTCTGCACGTATCGAAGGCCCTCAATACTGTATCGTGTAGCGAGCACCCATTGCGT
CAGCGAGATGCCTTACACTACGTATGATGATATGAAACCAGCGTGCTGGTCGTAGTGTCATTGTGCTGGTACTTGAAGGAGTGAGGAGTGTATTGTGATA
NTTTATGCCGGCTGTCTTGCGCTATAACCCTCACCGACGCTAATGTACGATTACGAATCTGCACAGGACGCACAGATGCACCACTTATCAGAGCGAGTCT
GCTTTGAAACGCAGATTAGCGATCTTGTGAGTCGTATCGGCATTATGCNCGATACCCAGCTAAAGCGTGGCGCGGCTCTATGCTGATAGGAGTCAGGCTC
TATTAATGCCGCATCACGAGATCTCTCGTGAGCTNCCNTATGCTCTTCGTTAGAGGATCTTGCTCTGTGTATCGAGATACGCTAAGAGGAGGTAGTAGAA
CGCGTACCATAGTACCAGCTATTACTCTTAACTCACTAACAGAAGTATCATNGTTTACTAATAAGTAGTACTTATAGTGATTCATCCCTTTCACTCTAGT
ACATCCTTGTNATTCCACAAAACATCCAAGTGCTGCCTATATACTGGTCTACGAGCCNGTACAATCTTCATNTCATTTTCGCACCTACAGCTAATCATAT
ACTCTCTACGCACATGCGTCTAATCTCATCTCGTCATATACTTGCTCNTNTAGTGAATTAGTCTCANTATCNGATATAGCTATGTGATCTCNTGCTCTAA
TATCTTTGCANCATTATACATCGTTTCGAATTTCACTAATTGCTTCTTATCACACTACAGTTAGACTTTTATACATTATTGTAATTATGTATATGTGAAG
TTATACTATACACACTATTTTGTGTATATCTTAGTACTCTTGTCTAGAATAATCTTCTTATTACTGTCCACTTCGTCTTCGTATCCGCTCANTCTTGATT
TCCTTAAACGTATGTCAGTTATACCCGCTGCTATATTTACCGTGTGTCTTATGATGTTGTGTCTGAGTGCATGCTGTCATTGGTATCTTTACGGATCATC
GCTTCTATCTCCTCNGTCTCTGTCGTGCTATGATAGCGCGACAATGGTTGCTCACATTGTCATATGAGCCATCGCATAGCTCTTATGTATAACTATCTAC
TCGCACACAATGAGCCATCATATGTGATTCTCACTGGCGCTGTGTGTCGTACTCAGCACGTATAATGTGCACTGCTCGTACTACATTTGCTGTCACTGGC
ATATATTCGTCGATTTGCTTGACGTGCTCACTTGCGCTCACTATATGATTATGTCATCTTACTAGTATCAATAGACCTCATACTATTACTATGTATAATT
ATCAACATCGTTGAACACGCATTACATGTAGTACAACGCTAATATAAGTTACATAAAGCTTCATCCTACATCGCTAAACTATGCTTAGATCTGATACTGA
CTACTGCAATTGCTACGGCCATCGATACCACTACATTCTCCACCTTCNTACCTGTATCCTACTATAACTGTGTT
>LE_HBa0147E11_SP6_72788 (trimmed for quality and cloning vector)
CG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.658114
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0147E11
Clone
Clone name
hba-147e11
LE_HBa0147E11
C02HBa0147E11
P147E11
Clone type
BAC
Contamination
none
Estimated length
114,679
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found