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Clone Read LE_HBa0033K05_T7_7017

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033K05_T7_7017
Primer
T7
ID from Seq. Facility
LE_HBa_033_K05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
861 trimmed for vector and quality, 938 raw
Genbank Accession
DU026396
Sequence
>LE_HBa0033K05_T7_7017 (raw untrimmed)
CGGACCTGGTACCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAAGATGTTGCACAGACTTGGTGCAAGATGTGGCAGGATAGTCGTGCGT
TGGGCGGAGTTCCGATAAATTAGGAGTTGTTAAAGACAGCTTTCCTAGAGAGATTCTTCCCAGGGAGATAAGCGAGGCGAAGGTTGAGGAGTTTATCAAC
CTTAAGCAGGGATCAATGAAAATCCGGAGTATTGCCTGAAGTTTGTTAAACTATCAAGGTATGCTACTTCCTTTGTATCTAACAGAAGGGATGAGATGAG
TAGGTTCTTCACAAAAATCACCGGAGATCTGGAGCAGGAGTGTCGGGATGTGATGCTCCACAATAACATGGACCTCTCCAGGTTGATGGTGCATGTCCAA
CAGGTAGAGGACAGCCAAAAAAAGAGCGGCGTCCGTAATGCTAGGAGGCCTAAGCCTCATGATCAGGCATGTTGTAGAAGTGGGAGCAACAGGAACAACT
TTTGCATCCGTGAGCAGCCCAAGTTTAAAAGGGGGCAACAGAGTTCAAGGAACTCTAACTTTCAGAGGAGTACAACACCTAGAGGCAGACCCGAGCCCAA
GAAGCGCAATAGAGATGAGATGCAGCATCCCAGAAAGGACTGTGCTAAGTGTGGCCGTGATCACAGTGGAGAGTGCAGACAGGGCACTAATGCCTTCTTT
GGTTGCGGTAAGAGCGGGCACATGGTTAAGGACTGCCCACAGAATAGGGGTCAGACTAGAGGTAATGCTCAGCCTAAGCCTAATTCATAGGGTGCACCAG
TAGTCGAGCCACCTAAGAGGAACATGTTCTATGCTCTGAAGGGCAAGGAGGACCAGGAGAAGTCCCTTGATATGGTCACCAGTATGCTGGCAGTATTCTC
AACTTCTGTTTAGGCTTACTTGATCCAGGGTCACTCTT
>LE_HBa0033K05_T7_7017 (trimmed for quality and cloning vector)
AGCTTAAGATGTTGCACAGACTTGGTGCAAGATGTGGCAGGATAGTCGTGCGTTGGGCGGAGTTCCGATAAATTAGGAGTTGTTAAAGACAGCTTTCCTA
GAGAGATTCTTCCCAGGGAGATAAGCGAGGCGAAGGTTGAGGAGTTTATCAACCTTAAGCAGGGATCAATGAAAATCCGGAGTATTGCCTGAAGTTTGTT
AAACTATCAAGGTATGCTACTTCCTTTGTATCTAACAGAAGGGATGAGATGAGTAGGTTCTTCACAAAAATCACCGGAGATCTGGAGCAGGAGTGTCGGG
ATGTGATGCTCCACAATAACATGGACCTCTCCAGGTTGATGGTGCATGTCCAACAGGTAGAGGACAGCCAAAAAAAGAGCGGCGTCCGTAATGCTAGGAG
GCCTAAGCCTCATGATCAGGCATGTTGTAGAAGTGGGAGCAACAGGAACAACTTTTGCATCCGTGAGCAGCCCAAGTTTAAAAGGGGGCAACAGAGTTCA
AGGAACTCTAACTTTCAGAGGAGTACAACACCTAGAGGCAGACCCGAGCCCAAGAAGCGCAATAGAGATGAGATGCAGCATCCCAGAAAGGACTGTGCTA
AGTGTGGCCGTGATCACAGTGGAGAGTGCAGACAGGGCACTAATGCCTTCTTTGGTTGCGGTAAGAGCGGGCACATGGTTAAGGACTGCCCACAGAATAG
GGGTCAGACTAGAGGTAATGCTCAGCCTAAGCCTAATTCATAGGGTGCACCAGTAGTCGAGCCACCTAAGAGGAACATGTTCTATGCTCTGAAGGGCAAG
GAGGACCAGGAGAAGTCCCTTGATATGGTCACCAGTATGCTGGCAGTATTCTCAACTTCTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.978069
Expected error %
0.881333
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38790.1| Score 120 E Value 2e-29 Identity 37.90% Align. Length 766bp (88.97%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 119 E Value 3e-29 Identity 36.60% Align. Length 766bp (88.97%) Frame 2
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033K05
Clone
Clone name
hba-33k5
LE_HBa0033K05
P033K05
Clone type
BAC
Contamination
none
Estimated length
124,287
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found