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Clone Read LE_HBa0186H19_T7_66037

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0186H19_T7_66037
Primer
T7
ID from Seq. Facility
LE_HBa_186_H19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
722 trimmed for vector and quality, 813 raw
Genbank Accession
DU075278
Sequence
>LE_HBa0186H19_T7_66037 (raw untrimmed)
TGGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTACTAGAGGTTTGATGGTTGTGGACCGTGGTGACAAGTTGTCTAACTTGTATG
TATTTCAGGGCTCCATGTCCAGAGACTCAGTAAATTTGGTGGAGAATGATACTTCATCAGAGTTATGGCATAGAAGGTTGAGTCATATGAGCGAGAAGAG
GATTTATAGTTTGGCTAAGAAAAATTTGCTTTCTGGAGTGAAACAAGCAAAGTTGAAGAAATGTGTTCATTGCTTAGCCGGTAAACAGAAAAGAGTTTCT
TTTCAGAGTCATCCGCCTTCAAGACAACTTGATTTGCTGGAGTTGGTACATTCTGATTTGTGTGGTCCTTTTAAGGTAAGATCTCATGGTGGTGCACTTT
ACTTTGTGACTTTTATTGATGATCATTCTCGCAAACTCTTGGTATTTCCTTTGAAGTCCAAGGATCAAGTACTTGATGTGTTCAAGAGTTTTTAGGCCTT
GGTTGAAAGACAAACAAGGAAGACATTGAAATGCATCTGCGCAGATAATGGTGGTGAGTATATTGGTCCTTTTGATAGATATTGCAGAGAGCAGGGTATT
AGGCATCAGAAAACTCCTCCAAAGACTCCTCAGTTAAATGGTTTAGCAGAGAGGATGAACAGAACTCTAGTTGAGAGGGTTAGATGTATGCTTTCAGATG
CTAACCTGTCAGATTCCTTTTGGGCAGAAGCACTTAATACTGCTGCTTATGTTATCAATTTATCTCCTGCTGTTTCTTTAAAATGGTGATGTCCCTGAAC
AAGTTTGGAATGG
>LE_HBa0186H19_T7_66037 (trimmed for quality and cloning vector)
AGCTTACTAGAGGTTTGATGGTTGTGGACCGTGGTGACAAGTTGTCTAACTTGTATGTATTTCAGGGCTCCATGTCCAGAGACTCAGTAAATTTGGTGGA
GAATGATACTTCATCAGAGTTATGGCATAGAAGGTTGAGTCATATGAGCGAGAAGAGGATTTATAGTTTGGCTAAGAAAAATTTGCTTTCTGGAGTGAAA
CAAGCAAAGTTGAAGAAATGTGTTCATTGCTTAGCCGGTAAACAGAAAAGAGTTTCTTTTCAGAGTCATCCGCCTTCAAGACAACTTGATTTGCTGGAGT
TGGTACATTCTGATTTGTGTGGTCCTTTTAAGGTAAGATCTCATGGTGGTGCACTTTACTTTGTGACTTTTATTGATGATCATTCTCGCAAACTCTTGGT
ATTTCCTTTGAAGTCCAAGGATCAAGTACTTGATGTGTTCAAGAGTTTTTAGGCCTTGGTTGAAAGACAAACAAGGAAGACATTGAAATGCATCTGCGCA
GATAATGGTGGTGAGTATATTGGTCCTTTTGATAGATATTGCAGAGAGCAGGGTATTAGGCATCAGAAAACTCCTCCAAAGACTCCTCAGTTAAATGGTT
TAGCAGAGAGGATGAACAGAACTCTAGTTGAGAGGGTTAGATGTATGCTTTCAGATGCTAACCTGTCAGATTCCTTTTGGGCAGAAGCACTTAATACTGC
TGCTTATGTTATCAATTTATCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.96065
Expected error %
0.405889
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 347 E Value 2e-94 Identity 23.70% Align. Length 719bp (99.58%) Frame 1
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 317 E Value 1e-85 Identity 21.80% Align. Length 719bp (99.58%) Frame 1
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0186H19
Clone
Clone name
hba-186h19
LE_HBa0186H19
P186H19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found