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Clone Read LE_HBa0186H19_SP6_66036

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0186H19_SP6_66036
Primer
SP6
ID from Seq. Facility
LE_HBa_186_H19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
639 trimmed for vector and quality, 930 raw
Genbank Accession
DU075277
Sequence
>LE_HBa0186H19_SP6_66036 (raw untrimmed)
CGGGGTTTACCCAAGGTATATTGGGTCCATTTGAAGTTCTGAAGCGCGTGGGGGAGGTGGCTTATGAATTGGCATTGCCTCCAGGACTGTCAGGAGTGCA
CCCGGTATTTCGTCTGTCTATGCTGAAAAGATATCATGGGGATGGAAACTACATTATTCGTTGGAATTCAGTTCATCTTGATGAGAATTTGTTTTATGAG
GAGGAGCCTGTTGCCATTTTAGATAGAAAAGTCCGCAAGTTGAGATCAAGGGAGATTGCATCCATCAACGTTCAATGGAAGAATCGGCCAATTGAAGAGT
CCACTTGGGAGAAGGAGGATGATATGTAAGAAAGATATCCACAACTTTTTACAGATTCTGGTACTCTTTCCCGCCCTTGTTTTCCTTCTTGTGATCGTTC
GAGGACGAACGATGGGTAAATTGGTATCTATTGTAATGACATGTTTAGTCGTTTCGAGTAGTAGAATTGTTTTTGTTAATAACTGACTGTGTCGACGGAT
CACACGACGGACCATCATGGTCACGACGGATCGTCGAGGGTCTTCGTGCCAAAACATTTAAACTCTGATATTTGGGTACGGGGAATCAACTCTCTGACTT
CGCGACGGAAGAGCAGCATGGACCATCGTAGAAACGATGGACCGTCACGAGCATCTTCACTAAAATCGACTCTCTGAACTCTGTGAAGACCCTGCAGGAC
AGACCTTTGCAGGCACGATGGGCCGGCACGAACTGCCTAACCTTGACTGAGTCGGATTTCTGCTTAAGTTTTAAAGGGTGTTTTGTACTATTTAGACCAA
CTGTTTGAATAATTGGGTAAGTTCATATCTTTTTATATTGGGGTTATCGGTGTTACCCTTATAAAAAAAAAGGGGTCCTTGAACACTTTCAGATATTTCA
ATATTGATTTTGTGGTACAATACTCTGTAT
>LE_HBa0186H19_SP6_66036 (trimmed for quality and cloning vector)
CATTTGAAGTTCTGAAGCGCGTGGGGGAGGTGGCTTATGAATTGGCATTGCCTCCAGGACTGTCAGGAGTGCACCCGGTATTTCGTCTGTCTATGCTGAA
AAGATATCATGGGGATGGAAACTACATTATTCGTTGGAATTCAGTTCATCTTGATGAGAATTTGTTTTATGAGGAGGAGCCTGTTGCCATTTTAGATAGA
AAAGTCCGCAAGTTGAGATCAAGGGAGATTGCATCCATCAACGTTCAATGGAAGAATCGGCCAATTGAAGAGTCCACTTGGGAGAAGGAGGATGATATGT
AAGAAAGATATCCACAACTTTTTACAGATTCTGGTACTCTTTCCCGCCCTTGTTTTCCTTCTTGTGATCGTTCGAGGACGAACGATGGGTAAATTGGTAT
CTATTGTAATGACATGTTTAGTCGTTTCGAGTAGTAGAATTGTTTTTGTTAATAACTGACTGTGTCGACGGATCACACGACGGACCATCATGGTCACGAC
GGATCGTCGAGGGTCTTCGTGCCAAAACATTTAAACTCTGATATTTGGGTACGGGGAATCAACTCTCTGACTTCGCGACGGAAGAGCAGCATGGACCATC
GTAGAAACGATGGACCGTCACGAGCATCTTCACTAAAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.978201
Expected error %
0.0952732
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 138 E Value 1e-31 Identity 18.80% Align. Length 335bp (52.43%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 131 E Value 2e-29 Identity 18.20% Align. Length 335bp (52.43%) Frame 1
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0186H19
Clone
Clone name
hba-186h19
LE_HBa0186H19
P186H19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found