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Clone Read LE_HBa0048A06_T7_63371

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0048A06_T7_63371
Primer
T7
ID from Seq. Facility
LE_HBa_048_A06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
771 trimmed for vector and quality, 815 raw
Genbank Accession
DU071649
Sequence
>LE_HBa0048A06_T7_63371 (raw untrimmed)
ACTGGGATCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATGAACGTCAACGTACTGCCCTTTAAGGGCTTGCTCCTGCTTTACAATTA
GTTGAACTAATCTTAGCAAGAATTCACATTCAAGAGCTAGAAGCTGACAGGAGGCGTCTTAGAAAGAAATTCAAACACTTTGCGAGGAAGCTGAATGAAG
AAAGAAGCTCATGGATGAGAAAAGAATGTCAGAAGATGCATGCTATAGTTGATCACTTAAAAGATGATTTGAGAAGAGAAAGAAGAAACTCTAAACAGTT
GGATATTGTGAATTCCAAATTGCTGGTTGATCTAGCTGATTCAAAGTTATCTTCGAGACAATATATGCATGATTATGAGAACGAAAGAAAATCTCGACAG
TTATTGGAGGATGTGTGCAATGAGCTAGTCAAGGAGATTGAAGAGGACAGAGCGGAAATTGAAGCATTGAAGCGTGAAAGTGCCAGACTTGAGGAGGAAG
TGGAAGAAGAGAGAAAAATGCTTCAATTGGCTGAGGTTTGGCGCGAAGAACGGGTTCAAATGAAGCTGATTGATGCAAAACTACTTTTAGAAGAAAAATA
TTGCCTGATGAGTAATCTTATATCAGAACTTCAGAGCTTTTTGAGAGCTAACAATGTAACTGTGGGCATGACTGACTTAATTGAAGTGCAAGTGGTCAAG
CAGGTTGTTGACTCATTGAACATCCAAGAAACAAAGGAGTTCTGCTCAAGCTCTCCCATATTAAATGACATATATACACTTAATGAGGGTTCTATTATAT
GTGAAGCGTCAAAAC
>LE_HBa0048A06_T7_63371 (trimmed for quality and cloning vector)
AGCTTTATGAACGTCAACGTACTGCCCTTTAAGGGCTTGCTCCTGCTTTACAATTAGTTGAACTAATCTTAGCAAGAATTCACATTCAAGAGCTAGAAGC
TGACAGGAGGCGTCTTAGAAAGAAATTCAAACACTTTGCGAGGAAGCTGAATGAAGAAAGAAGCTCATGGATGAGAAAAGAATGTCAGAAGATGCATGCT
ATAGTTGATCACTTAAAAGATGATTTGAGAAGAGAAAGAAGAAACTCTAAACAGTTGGATATTGTGAATTCCAAATTGCTGGTTGATCTAGCTGATTCAA
AGTTATCTTCGAGACAATATATGCATGATTATGAGAACGAAAGAAAATCTCGACAGTTATTGGAGGATGTGTGCAATGAGCTAGTCAAGGAGATTGAAGA
GGACAGAGCGGAAATTGAAGCATTGAAGCGTGAAAGTGCCAGACTTGAGGAGGAAGTGGAAGAAGAGAGAAAAATGCTTCAATTGGCTGAGGTTTGGCGC
GAAGAACGGGTTCAAATGAAGCTGATTGATGCAAAACTACTTTTAGAAGAAAAATATTGCCTGATGAGTAATCTTATATCAGAACTTCAGAGCTTTTTGA
GAGCTAACAATGTAACTGTGGGCATGACTGACTTAATTGAAGTGCAAGTGGTCAAGCAGGTTGTTGACTCATTGAACATCCAAGAAACAAAGGAGTTCTG
CTCAAGCTCTCCCATATTAAATGACATATATACACTTAATGAGGGTTCTATTATATGTGAAGCGTCAAAAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.940022
Expected error %
0.656777
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g50660.1 Score 220 E Value 6e-58 Identity 15.60% Align. Length 704bp (91.31%) Frame 1
68414.m05696 expressed protein similar to liver stage antigen-1 (GI:510184) [Plasmodium falciparum]; similar to Myosin II heavy chain, non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum]; similar to liver stage antigen (GI:9916) [Plasmodium falciparum]; similar to Kinesin-like protein KLPA (Swiss-Prot:P28739) [Emericella nidulans]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g20350.1 Score 213 E Value 1e-55 Identity 15.70% Align. Length 707bp (91.70%) Frame 1
68416.m02578 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_175481.1| Score 220 E Value 3e-56 Identity 15.60% Align. Length 704bp (91.31%) Frame 1
expressed protein [Arabidopsis thaliana] gb|AAG51180.1| unknown protein [Arabidopsis thaliana] pir||C96543 unknown protein [imported] - Arabidopsis thaliana gb|AAF87869.1| Unknown protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_188670.1| Score 213 E Value 6e-54 Identity 15.70% Align. Length 707bp (91.70%) Frame 1
expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0048A06
Clone
Clone name
hba-48a6
LE_HBa0048A06
P048A06
Clone type
BAC
Contamination
none
Estimated length
112,692
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found