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Clone Read LE_HBa0048A06_SP6_63370

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0048A06_SP6_63370
Primer
SP6
ID from Seq. Facility
LE_HBa_048_A06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
655 trimmed for vector and quality, 825 raw
Genbank Accession
DU071648
Sequence
>LE_HBa0048A06_SP6_63370 (raw untrimmed)
GGTATGCAACTGCGTTAACCAATGAGACACTCTTAGCTTGTCTACGGGGAGGTCCAAGCAGGGAAATGAGGTCTTACACAATCGGTGCTTTAGTTTGTAA
GAGGTGAAAACATTGCGGCTATCTTTATGAAATAAAGGGTTGCAACCTATGCCTTCCTTCAGGCTTCAGTCAAACCATAACTACTCCTGGGAACAAATAA
TAGGAAAAGGTAGACTAGAGAATAGGAACATGATCAAAAAAAGAGAAAGCATAGGTTTAAAGTAAAGCTAAACCGGCCTCAAATCTCTAACTCTCATGCA
CATGAGCTTGTTTTCTATGTCTAATCTTGGTTCGCTGCAGGTTGTGTTATCTGCTTTTGATTCTGACGCATCTCTTGACGTCTTGGATCATCCTGTTTTG
AATCTGATATACTACCTGGTATGTATCATTTTCGTTATTTCATGTTCCTTGCGCTTACTGCTTTGTCTGAGTGATCACATTCTTCTCTGTGGCAGCTGGT
AGAAATTCTTCCTTCAGCTCTTGTGCTGTACATCCTGCGAAAACTGCCTCCAAAAAGAGTGTCTGCACAATACCACCCAATCAGTTAGCTGCAGCAGAAT
TTTATCGTTAGTGATACACGTTCCCATGGTTTCTGTTGCAAAAGCTAACTGGAGTTGTTCAGGAAAAGTGAAAACTGCAAAAGGATATTCGGTTGCAATA
ATTTCTGCGGAAAGGCAAAGATTCAACGCTTTTTTGGCATTTGTTAAAACAGAGGTTAAGCCTGTTTTTGCTACTTTATATTGGTTTCTGTGGTCTTAAT
TGTGAAACATGAAAACAAATAAGTT
>LE_HBa0048A06_SP6_63370 (trimmed for quality and cloning vector)
ATGAGACACTCTTAGCTTGTCTACGGGGAGGTCCAAGCAGGGAAATGAGGTCTTACACAATCGGTGCTTTAGTTTGTAAGAGGTGAAAACATTGCGGCTA
TCTTTATGAAATAAAGGGTTGCAACCTATGCCTTCCTTCAGGCTTCAGTCAAACCATAACTACTCCTGGGAACAAATAATAGGAAAAGGTAGACTAGAGA
ATAGGAACATGATCAAAAAAAGAGAAAGCATAGGTTTAAAGTAAAGCTAAACCGGCCTCAAATCTCTAACTCTCATGCACATGAGCTTGTTTTCTATGTC
TAATCTTGGTTCGCTGCAGGTTGTGTTATCTGCTTTTGATTCTGACGCATCTCTTGACGTCTTGGATCATCCTGTTTTGAATCTGATATACTACCTGGTA
TGTATCATTTTCGTTATTTCATGTTCCTTGCGCTTACTGCTTTGTCTGAGTGATCACATTCTTCTCTGTGGCAGCTGGTAGAAATTCTTCCTTCAGCTCT
TGTGCTGTACATCCTGCGAAAACTGCCTCCAAAAAGAGTGTCTGCACAATACCACCCAATCAGTTAGCTGCAGCAGAATTTTATCGTTAGTGATACACGT
TCCCATGGTTTCTGTTGCAAAAGCTAACTGGAGTTGTTCAGGAAAAGTGAAAACT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974467
Expected error %
0.387178
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g21790.1 Score 58 E Value 3e-17 Identity 83.90% Align. Length 241bp (36.79%) Frame 3
68417.m03152 transmembrane protein-related (TOM1) contains some similarity to transmembrane protein TOM3 GI:15425641 from [Arabidopsis thaliana]; identical to cDNA TOM1 GI:9967414
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g02180.1 Score 48 E Value 1e-12 Identity 79.30% Align. Length 247bp (37.71%) Frame 3
68415.m00154 tobamovirus multiplication protein 3 (TOM3) identical to tobamovirus multiplication protein (TOM3) GI:15425641 from [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL85050.1| Score 58 E Value 1e-15 Identity 83.90% Align. Length 241bp (36.79%) Frame 3
unknown protein [Arabidopsis thaliana] gb|AAK76723.1| unknown protein [Arabidopsis thaliana] ref|NP_567636.1| transmembrane protein-related (TOM1) [Arabidopsis thaliana] dbj|BAB12402.1| putative transmembrane protein [Arabidopsis thaliana] dbj|BAB12401.1| putative transmembrane protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_476360.1| Score 58 E Value 2e-14 Identity 84.40% Align. Length 244bp (37.25%) Frame 3
putative transmembrane protein(TOM3) [Oryza sativa (japonica cultivar-group)] dbj|BAD31838.1| putative transmembrane protein(TOM3) [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0048A06
Clone
Clone name
hba-48a6
LE_HBa0048A06
P048A06
Clone type
BAC
Contamination
none
Estimated length
112,692
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found