Clone Read LE_HBa0012K20_T7_6279

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012K20_T7_6279
Primer
T7
ID from Seq. Facility
LE_HBa_012_K20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
716 trimmed for vector and quality, 876 raw
Genbank Accession
DU025781
Sequence
>LE_HBa0012K20_T7_6279 (raw untrimmed)
ACCGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCTTGAATAGACTTCACTTTCCCTTTCGAATCCCTCAAAAGGTCAGTACC
CCAAGGTCTAACCTCCATTGCATCAAACCAACCAATGGGGGACCTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAG
CTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCG
TCCTTTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCAAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAA
CTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCAATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCTGCATTGTAAGTCACC
TTTACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAATCACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCA
TTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTT
GGCAATAAAGTCAACAATATCACGCTTCTTTCTACTCCACCAAAAGTGTTGCTTTAGGTCACAATACATCTTGGTTGCACCCGGATGTATAGAATACCTT
GAAACTTGGGCCCTCTGTCAGAATAATTATTGATTTAAATCATCCAACGCGGGGGAACACATTCCCCTTTCCCTTG
>LE_HBa0012K20_T7_6279 (trimmed for quality and cloning vector)
AGCTTTTCTTGAATAGACTTCACTTTCCCTTTCGAATCCCTCAAAAGGTCAGTACCCCAAGGTCTAACCTCCATTGCATCAAACCAACCAATGGGGGACC
TACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCA
ATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTA
AGGTCAAACCTAGTACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGATAGTGGAACCCCATGCA
ATCGAACGATTTCTGAGATATAGATCTTGGCTAACTTCTCTGCATTGTAAGTCACCTTTACCGGAATGAAATGAGCAGATTTAGTTAACCTATCAACAAT
CACCCAAATGGAGTCATACTTACCCATTGTCCTTGGAAGACCAACCACAAAGTCCATTGCAATTCTTTCCCACTTCCATTCCGGAATGGGCATTCTCTGA
AGTGTTCCTCCGGGCCTTTGGTGTTCATACTTTACTTGTTGACAGTTTGGACACTTGGCAATAAAGTCAACAATATCACGCTTCTTTCTACTCCACCAAA
AGTGTTGCTTTAGGTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973527
Expected error %
0.500202
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 386 E Value 1e-106 Identity 24.50% Align. Length 713bp (99.58%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 382 E Value 1e-105 Identity 24.40% Align. Length 713bp (99.58%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012K20
Clone
Clone name
hba-12k20
LE_HBa0012K20
P012K20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found