Clone Read LE_HBa0012K20_SP6_6278

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012K20_SP6_6278
Primer
SP6
ID from Seq. Facility
LE_HBa_012_K20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
531 trimmed for vector and quality, 894 raw
Genbank Accession
DU025780
Sequence
>LE_HBa0012K20_SP6_6278 (raw untrimmed)
AAATGTCTTTCATCTAGGCTATGANANNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNANNGNNNNCNCNTCCTCTAGNANAANATCCN
CCNAANAAANGANGATCAANCAACCCCTACCCAAAACAACAAGAAAANNNNGNCANANCACCACCAANNCCGCGGCAGNNNGAGCNCNCAGAAGGGCATC
NAGTAACATTAAAATCTCCGCAAACTATCCATGGTTCCACAATCCTTCCTCTGATGGCTTTCAATTCCTCCCAAACCTTTCTGATCTCTCTACTACAATC
AGCATATGTTGCAATTATGTGCCAACTAAACTCTTCACGTACCCCTATGAATTTCCCAATTAAGCTTTGCCTGCCAATCTCCACCAGTTCCCCCTTCCAT
ACCCTTTTATCCCACGAAATTGCAATCCCCCCTCTGCTCCCCATTGCCTCCTTATGAACTTCTCCCATCCATCTATTTTCCCATATCTTCGGTATTAGTC
CATCAATATTATCCTCCAGCTTTGTCTCAACTAAAACATAAATATCTGCCTCGCACTGATGTATTAGTTTCCTCACAGTGTCCTATTTATCCCTCCCATT
CAGCCCCCTCACATTCCATGAGATTATTTTCACTCTCATTGATTGGTTAGAGCTAAAATCCTCCCACTAGATTTTGGTTCCCCGTCTTTGAAATTCATAC
TAAAGAACAAATTTCTCACCTCTTTTGGTACATCATTGTTAGATTTTATTGTCTTCATCTTCTCCTCTTTTCCAGGATCCTTTTCCCTCTTTTGGTCTAG
CATAGCTAACATGGTATACGCTTCCTTTTTTGCGTCCTTTAAAATCGAAACCAAAATTGTTGAACCTAATTTTAATCATGGTTCCCCTTGGAAT
>LE_HBa0012K20_SP6_6278 (trimmed for quality and cloning vector)
AGTAACATTAAAATCTCCGCAAACTATCCATGGTTCCACAATCCTTCCTCTGATGGCTTTCAATTCCTCCCAAACCTTTCTGATCTCTCTACTACAATCA
GCATATGTTGCAATTATGTGCCAACTAAACTCTTCACGTACCCCTATGAATTTCCCAATTAAGCTTTGCCTGCCAATCTCCACCAGTTCCCCCTTCCATA
CCCTTTTATCCCACGAAATTGCAATCCCCCCTCTGCTCCCCATTGCCTCCTTATGAACTTCTCCCATCCATCTATTTTCCCATATCTTCGGTATTAGTCC
ATCAATATTATCCTCCAGCTTTGTCTCAACTAAAACATAAATATCTGCCTCGCACTGATGTATTAGTTTCCTCACAGTGTCCTATTTATCCCTCCCATTC
AGCCCCCTCACATTCCATGAGATTATTTTCACTCTCATTGATTGGTTAGAGCTAAAATCCTCCCACTAGATTTTGGTTCCCCGTCTTTGAAATTCATACT
AAAGAACAAATTTCTCACCTCTTTTGGTACA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.930723
Expected error %
0.366312
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW22882.1| Score 128 E Value 6e-29 Identity 14.80% Align. Length 431bp (81.17%) Frame 2
unknown [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_463102.1| Score 70 E Value 3e-11 Identity 9.70% Align. Length 422bp (79.47%) Frame 2
putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] gb|AAO59987.1| putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] gb|AAO38009.1| putative reverse transcriptase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012K20
Clone
Clone name
hba-12k20
LE_HBa0012K20
P012K20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found