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Clone Read LE_HBa0042D15_T7_62765

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0042D15_T7_62765
Primer
T7
ID from Seq. Facility
LE_HBa_042_D15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
353 trimmed for vector and quality, 817 raw
Sequence
>LE_HBa0042D15_T7_62765 (raw untrimmed)
TTGGATAATCATTGCTGCCTCTTCAAATTTTTCCTTCNGNTGACACCCGTACATNAAATGGTCAAAATACTAATTAATTATTCTACCATACTTCAACCGG
GAGCAAAGGGAAGGGGTCATTAGCACTTGGAAATTTGACCAAGCACAAAGTATGAAAGCTTTGGCCAAAATGATAATTGTTGACGAGCTACCATTTAGTT
TTGTTGAGAAAGAGGGTTTTAAAAACTTCATGAGAGTTACAATGTCGCAATTTCATATTCCTTCTCGTAGAACTATGATGAGAGATTGTTATGAACTATA
CCTTGAAGAAAAAAAACTTTTGAAGAAGGTTTTCAAAGAAGCACGTCCAAGAGTTTGTCTTACAACAGATACTTGGACCTCTATACAAAAAATAAACTAC
ATGTGTTTGACAGCCCACTTTATAGATAGAAATTGGATTTTGCATCAAAGAATAATAAATTTTTTTCCTATTTCTAGTCACAACGGCGTGGATATGGCGG
CTTGCATTACTAATTGTTTGCTTGAATGGGGTTTGAATAATGTGCTTACTATTACAGTTGATAATGCTAGTCCTAACGATGTCTATGTGAAAGAATGTCT
CAAAAATTGAGCCATTGCGGAACAACATTATGGATGGTGACCTACTCTTGTGAGGCGTTGTCCCTATCCTTACTTTACTTACTAGATGGTTCGAGGAATG
CGTAGTCTTCCATCTACTCAACATGCGTGATACTTTATCCATCGCCGCAGATCTTAAGCTAATCACTAGGCACCATCTATAACTTCAGAACATCTATTAA
CGTCAACAGAGACTTAT
>LE_HBa0042D15_T7_62765 (trimmed for quality and cloning vector)
AGCACTTGGAAATTTGACCAAGCACAAAGTATGAAAGCTTTGGCCAAAATGATAATTGTTGACGAGCTACCATTTAGTTTTGTTGAGAAAGAGGGTTTTA
AAAACTTCATGAGAGTTACAATGTCGCAATTTCATATTCCTTCTCGTAGAACTATGATGAGAGATTGTTATGAACTATACCTTGAAGAAAAAAAACTTTT
GAAGAAGGTTTTCAAAGAAGCACGTCCAAGAGTTTGTCTTACAACAGATACTTGGACCTCTATACAAAAAATAAACTACATGTGTTTGACAGCCCACTTT
ATAGATAGAAATTGGATTTTGCATCAAAGAATAATAAATTTTTTTCCTATTTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.92378
Expected error %
0.583113
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP51893.1| Score 108 E Value 4e-23 Identity 15.10% Align. Length 344bp (97.45%) Frame 2
putative Tam3-like transposon protein [Oryza sativa (japonica cultivar-group)] ref|NP_919606.1| putative Tam3-like transposon protein [Oryza sativa (japonica cultivar-group)] gb|AAL31650.1| Putative Tam3-like transposon protein [Oryza sativa]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB82966.1| Score 108 E Value 4e-23 Identity 15.90% Align. Length 338bp (95.75%) Frame 2
putative protein [Arabidopsis thaliana] pir||T48044 hypothetical protein T12C14.220 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0042D15
Clone
Clone name
hba-42d15
LE_HBa0042D15
P042D15
Clone type
BAC
Contamination
none
Estimated length
120,242
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found