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Clone Read LE_HBa0042D15_SP6_62764

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0042D15_SP6_62764
Primer
SP6
ID from Seq. Facility
LE_HBa_042_D15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
631 trimmed for vector and quality, 825 raw
Sequence
>LE_HBa0042D15_SP6_62764 (raw untrimmed)
TCTTTTGCCGTTCTCTTAGCTTTCAGCGATCAATGCAAAATTAGAATCTCGGATCCTGCAAATTCCATGCTTGATAGGCACCTCGTAGCCGTTCTCTTGA
AGTTGACCCACATTGATAAGGTTTGTTTTCAGTTCTGGTGCAAAGAAAATATCAGAGATAATTTGCATAGATGAAGACTTTGTTTGGAGTTTCACCTTCC
CTTTACCTTTGACAGCTATACGAGAATCATCGCCAAACTTGACTGTTGTGCAAAAAGTTTCATCTAGTTCAGAAAATGCAGATTTTCTCCAGTCAAATGG
TTGCTACAACTCGTGTCTAAATACCATAAGCTTTTGTGGTATTGTTCTGAGGATTGGCTCACCATTAACAAAGAGACCTCCTCCTCCTCAGTTACTTCTT
CAAAATTAGAGTTCTCCACACGTACATTTTTCAGATTTGTACGACATTCAGAATGGTAATGACCATACCTGTGACATCTATAACACTCGATATGAGACTT
ATCTACAAATCTTGCCTTCCCATTGGACGAGTGTTGTTGATCACGATCATGCTGACCATTCTGTTCTCGGTTTCCCTCTTCAGTTTTCTCTGAGTTTCTT
CCCTTCCACTTGCTCTTTCTGCGCCTAGAATCTTTGGAGGTTGTGGTTACTTGTAATGCTTGCTCTTCTACATCCTGTTGAACACTTTTCTGCTCATGAA
CCATCATAGAATTTTTGTAATTCATCTAGTGAAATATTATCTCAAATCTTTGCGATTCTTCAATGGAATTGATAAACGTAATTGTATTTTTCTCAACTTG
GTTCCGCTAGGACTTTCTCCCACTA
>LE_HBa0042D15_SP6_62764 (trimmed for quality and cloning vector)
CGATCAATGCAAAATTAGAATCTCGGATCCTGCAAATTCCATGCTTGATAGGCACCTCGTAGCCGTTCTCTTGAAGTTGACCCACATTGATAAGGTTTGT
TTTCAGTTCTGGTGCAAAGAAAATATCAGAGATAATTTGCATAGATGAAGACTTTGTTTGGAGTTTCACCTTCCCTTTACCTTTGACAGCTATACGAGAA
TCATCGCCAAACTTGACTGTTGTGCAAAAAGTTTCATCTAGTTCAGAAAATGCAGATTTTCTCCAGTCAAATGGTTGCTACAACTCGTGTCTAAATACCA
TAAGCTTTTGTGGTATTGTTCTGAGGATTGGCTCACCATTAACAAAGAGACCTCCTCCTCCTCAGTTACTTCTTCAAAATTAGAGTTCTCCACACGTACA
TTTTTCAGATTTGTACGACATTCAGAATGGTAATGACCATACCTGTGACATCTATAACACTCGATATGAGACTTATCTACAAATCTTGCCTTCCCATTGG
ACGAGTGTTGTTGATCACGATCATGCTGACCATTCTGTTCTCGGTTTCCCTCTTCAGTTTTCTCTGAGTTTCTTCCCTTCCACTTGCTCTTTCTGCGCCT
AGAATCTTTGGAGGTTGTGGTTACTTGTAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960886
Expected error %
0.175245
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB75469.1| Score 81 E Value 7e-24 Identity 27.60% Align. Length 559bp (88.59%) Frame 3
copia-type reverse transcriptase-like protein [Arabidopsis thaliana] pir||T49313 copia-type reverse transcriptase-like protein - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA69271.1| Score 81 E Value 7e-24 Identity 27.60% Align. Length 559bp (88.59%) Frame 3
lectin receptor kinase [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0042D15
Clone
Clone name
hba-42d15
LE_HBa0042D15
P042D15
Clone type
BAC
Contamination
none
Estimated length
120,242
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found