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Clone Read LE_HBa0134K12_T7_60791

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0134K12_T7_60791
Primer
T7
ID from Seq. Facility
LE_HBa_134_K12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
811 trimmed for vector and quality, 907 raw
Genbank Accession
DU073046
Sequence
>LE_HBa0134K12_T7_60791 (raw untrimmed)
GTATGACTGGGCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGTATTCGACCATGTTGTTCGCGCTATGGGGTCCCAGCTTAGCCGCC
ATGGGTTAGTGCTGACCCTTTTCTGACACTAAGACTGCTCCGATACCTTTATCACGATGATTTGACTCTCTATAAAAGAATAATCTCCAACTTGTACATG
CTTCAGAAATATCCTCACCCACAAATGATACTTCTTCATCGTGAAAATAGGTCTTAATTTGTTCATACTCTTCATCAACGGGATTTTCTGCAAGATGATC
AACCAAAGACTATGACTTTATCTCTTTCTGAGTCACATACACAATGTCAAATTCACTCAACAACATTTTCCACTTAGATAACTTTCCAGTCAGCATCGCC
TTCTAGAAAATATACTTTAGTGGATCCATTCTGGAAATGAGGTATGTAGTATAAAAAGGCAAATAATGTCTCAGTTTCTCGGTAAGCCACGTCAAAGCAC
AACACGTTCTCTCCAACAAAGTGTAACGAGACTCGTATGGAGTAAAATTCTTGCTTATATAGTAGATAACCCTTTCCTTCTTTCCTGTCTCGTTGTGTTG
ACCAAGTACGCATCCGAATGTACTATCTGAGACAGACAAGTACAACAACAAAGGGCTCTCTTCTCGCGGAGGAACCAATACCGGTGGATTGGACAAATAG
TTCTTGCTAGCATCAAAAGTAGTTTGACACTCTTCAGTCCACTTTTATCGGGGTGTCTTTCTTCAACAACTTTGAAAATAGGATCCGACACCATGGTTTA
TTGAGCCTAGGAATCGACTGATGTAGTTTAATCTCCCTAAGAAACCTCATCACTTCTTATCTCCTCTTCAGGGGAGTAAACTCTGAATTATTTAATCTAG
AAAGATC
>LE_HBa0134K12_T7_60791 (trimmed for quality and cloning vector)
AGCTTCGTATTCGACCATGTTGTTCGCGCTATGGGGTCCCAGCTTAGCCGCCATGGGTTAGTGCTGACCCTTTTCTGACACTAAGACTGCTCCGATACCT
TTATCACGATGATTTGACTCTCTATAAAAGAATAATCTCCAACTTGTACATGCTTCAGAAATATCCTCACCCACAAATGATACTTCTTCATCGTGAAAAT
AGGTCTTAATTTGTTCATACTCTTCATCAACGGGATTTTCTGCAAGATGATCAACCAAAGACTATGACTTTATCTCTTTCTGAGTCACATACACAATGTC
AAATTCACTCAACAACATTTTCCACTTAGATAACTTTCCAGTCAGCATCGCCTTCTAGAAAATATACTTTAGTGGATCCATTCTGGAAATGAGGTATGTA
GTATAAAAAGGCAAATAATGTCTCAGTTTCTCGGTAAGCCACGTCAAAGCACAACACGTTCTCTCCAACAAAGTGTAACGAGACTCGTATGGAGTAAAAT
TCTTGCTTATATAGTAGATAACCCTTTCCTTCTTTCCTGTCTCGTTGTGTTGACCAAGTACGCATCCGAATGTACTATCTGAGACAGACAAGTACAACAA
CAAAGGGCTCTCTTCTCGCGGAGGAACCAATACCGGTGGATTGGACAAATAGTTCTTGCTAGCATCAAAAGTAGTTTGACACTCTTCAGTCCACTTTTAT
CGGGGTGTCTTTCTTCAACAACTTTGAAAATAGGATCCGACACCATGGTTTATTGAGCCTAGGAATCGACTGATGTAGTTTAATCTCCCTAAGAAACCTC
ATCACTTCTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.976058
Expected error %
0.982653
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 310 E Value 4e-83 Identity 21.00% Align. Length 695bp (85.70%) Frame 2
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 292 E Value 6e-78 Identity 20.30% Align. Length 689bp (84.96%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0134K12
Clone
Clone name
hba-134k12
LE_HBa0134K12
P134K12
Clone type
BAC
Contamination
none
Estimated length
88,369
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found