Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0134K12_SP6_60790

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0134K12_SP6_60790
Primer
SP6
ID from Seq. Facility
LE_HBa_134_K12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
716 trimmed for vector and quality, 843 raw
Genbank Accession
DU073045
Sequence
>LE_HBa0134K12_SP6_60790 (raw untrimmed)
CGGAGGTATTTTCTTTTGTGTTTGCCCTAACACAGCTCTCGCAAAGACCCATATCAACAGACTTCAGACCCTCTAACCTTTAAAGGCCCCCCAGCATCTT
CATTCCTTTAGTACTCACCTTTCCAAGTCTGTTATGCCACAGACATGAACTGGAAGCACCTTCAGCAACAGCGGCCATGTTTATACACCCTGCAATGGTG
TACAAGGTTCCAGATTTGGTGCCACGAGCTACTACCATAGCACTTTTCACGATCTTCCACGAACATTTCCCAAACTCTGCTGCATATCCCGTGCTATCCA
ACTGACCAACAGAGATCATATTTTTCTTGATCCCAGGAATATATCTGACATCCTCCAATGTCCACTGGTTTCCCAAGGTGGTCTTTATGCAAACATCCCC
CTTTCCTTCAATCTCTAAGGCTTTATTGTCAGCAAGATATACTTTTTCAAAATTTCCAGATTTAAAATTTTGGAACAACTCCTTGCTTGGAGACGAATGT
AAAGATGCACCAGAATCCAAAATCCATGATTCAACCGGGCTGTTCACACTAAGGATTAGAGTATCCCCAATGTCCTCTGCTGAATTTACAGAATCATTGT
CATCTCCAAATTTTTGATTCTGTTTCTTCTTTGGCTTTGTACAGTTCGTCCGAAAGTGTCCTTTTTCTCCACAGTTTCAACAAGTCACGTTTGATCTGTT
CGGTGATTTTCCTCGATTCCTTGATTTTGATCGACCATGTTTGATTTTTGGCCTTTCATCTTACTTCTCCCCCCTTCGATCAACGCTGAAAGCACTGCCC
GATGAATCTCCCACTTCTTCGTTTGCCAATATTTTCCCTAAAN
>LE_HBa0134K12_SP6_60790 (trimmed for quality and cloning vector)
TCTCGCAAAGACCCATATCAACAGACTTCAGACCCTCTAACCTTTAAAGGCCCCCCAGCATCTTCATTCCTTTAGTACTCACCTTTCCAAGTCTGTTATG
CCACAGACATGAACTGGAAGCACCTTCAGCAACAGCGGCCATGTTTATACACCCTGCAATGGTGTACAAGGTTCCAGATTTGGTGCCACGAGCTACTACC
ATAGCACTTTTCACGATCTTCCACGAACATTTCCCAAACTCTGCTGCATATCCCGTGCTATCCAACTGACCAACAGAGATCATATTTTTCTTGATCCCAG
GAATATATCTGACATCCTCCAATGTCCACTGGTTTCCCAAGGTGGTCTTTATGCAAACATCCCCCTTTCCTTCAATCTCTAAGGCTTTATTGTCAGCAAG
ATATACTTTTTCAAAATTTCCAGATTTAAAATTTTGGAACAACTCCTTGCTTGGAGACGAATGTAAAGATGCACCAGAATCCAAAATCCATGATTCAACC
GGGCTGTTCACACTAAGGATTAGAGTATCCCCAATGTCCTCTGCTGAATTTACAGAATCATTGTCATCTCCAAATTTTTGATTCTGTTTCTTCTTTGGCT
TTGTACAGTTCGTCCGAAAGTGTCCTTTTTCTCCACAGTTTCAACAAGTCACGTTTGATCTGTTCGGTGATTTTCCTCGATTCCTTGATTTTGATCGACC
ATGTTTGATTTTTGGC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956871
Expected error %
0.974333
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 155 E Value 7e-37 Identity 12.00% Align. Length 701bp (97.91%) Frame 3
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 153 E Value 5e-36 Identity 12.00% Align. Length 707bp (98.74%) Frame 3
hypothetical retrotransposon [Ipomoea batatas]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0134K12
Clone
Clone name
hba-134k12
LE_HBa0134K12
P134K12
Clone type
BAC
Contamination
none
Estimated length
88,369
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found