Clone Read LE_HBa0123O23_T7_58701

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123O23_T7_58701
Primer
T7
ID from Seq. Facility
LE_HBa_123_O23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
714 trimmed for vector and quality, 862 raw
Sequence
>LE_HBa0123O23_T7_58701 (raw untrimmed)
CTGGGACTGGGTACCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCAAGTAGTTTTCCCAAAAGACTTGGTCCTCCAAAGAACATTGACT
GAAGCTACTTCATTAGGTCTCAATTTGTGAAGTTGATGATCTAGAATTTGAATCGGAATATCCTCATAAGATAGACTATCCTTGATCCCAATATTCTTTG
TTGGTGTAATCAATGATGAATCACTGATGCACTTTTTCAACATAGAGATGTGAAACACCGGATGAACTGTTGCTAACTCTTGAGGTAGCTCTAACTCATA
ATATACATTAGCAATCCCCTTGACTATGCGATAAGGTTCAATGTATTGGGGACTAAGCTTTCCCTTCTTACGAAGCCTCATTACCCATTCATGGGTGAAG
CCTTCAAATACTCCTAACCATCTGCCTCAAACTCTAACGACCTTCTCCTAATATTTGTGTAGGATTTTTGATGACTCGTCGCCTTTTTCAACCTCTCTTA
AATCACCTTCACCTTATCCGTAGCTTGGTGAAATAAATCATGTCCTATTAACCTTGGTTCACCAACCTCAAACCATCAAATAGAAGATCTGCATCTTCAC
CCACAAATAGTTTCATATGGAGCAATCTAGATGCTAGAATGAAGAAAGTTGTTTTATTCAAACACAATGAGAGGTAGGTGATCATCTCAATTCCCTTTGA
ATTCAATAACACAATCCATCAGCATATCTTCTAATGTCGGAATGGTACACTCTGCTTGGTCGTCAGTCTTAAGGATAAAAGCCGTACTTAAGTTCACCTT
TGAACCCTACCTTTTCTAAAAAATTTCCTTTTTTGAAATAATAAGACTAAAATCCCTGCCGC
>LE_HBa0123O23_T7_58701 (trimmed for quality and cloning vector)
AGCTTCCAAGTAGTTTTCCCAAAAGACTTGGTCCTCCAAAGAACATTGACTGAAGCTACTTCATTAGGTCTCAATTTGTGAAGTTGATGATCTAGAATTT
GAATCGGAATATCCTCATAAGATAGACTATCCTTGATCCCAATATTCTTTGTTGGTGTAATCAATGATGAATCACTGATGCACTTTTTCAACATAGAGAT
GTGAAACACCGGATGAACTGTTGCTAACTCTTGAGGTAGCTCTAACTCATAATATACATTAGCAATCCCCTTGACTATGCGATAAGGTTCAATGTATTGG
GGACTAAGCTTTCCCTTCTTACGAAGCCTCATTACCCATTCATGGGTGAAGCCTTCAAATACTCCTAACCATCTGCCTCAAACTCTAACGACCTTCTCCT
AATATTTGTGTAGGATTTTTGATGACTCGTCGCCTTTTTCAACCTCTCTTAAATCACCTTCACCTTATCCGTAGCTTGGTGAAATAAATCATGTCCTATT
AACCTTGGTTCACCAACCTCAAACCATCAAATAGAAGATCTGCATCTTCACCCACAAATAGTTTCATATGGAGCAATCTAGATGCTAGAATGAAGAAAGT
TGTTTTATTCAAACACAATGAGAGGTAGGTGATCATCTCAATTCCCTTTGAATTCAATAACACAATCCATCAGCATATCTTCTAATGTCGGAATGGTACA
CTCTGCTTGGTCGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961226
Expected error %
0.629284
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 165 E Value 9e-40 Identity 21.90% Align. Length 410bp (57.42%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 165 E Value 9e-40 Identity 65.70% Align. Length 706bp (98.88%) Frame 1
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123O23
Clone
Clone name
hba-123o23
LE_HBa0123O23
P123O23
Clone type
BAC
Contamination
none
Estimated length
84,020
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found