Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0101F20_SP6_56726

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0101F20_SP6_56726
Primer
SP6
ID from Seq. Facility
LE_HBa_101_F20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 825 raw
Sequence
>LE_HBa0101F20_SP6_56726 (raw untrimmed)
TCTTGTTTTTTTTTTTATTATGTTTTTTTTTTTTGTTTTTTTTTTTCTTTTTTTTTTTATTTTTTTTTTTTTTCCTCGTATTTATCTCAAAGCAGAGGAG
CCGCACTACAGGGCAAAATCTTACTACAATGTCCTCAACGTGGACATAATATACCCTATTCACGAAAACATCAATTTGATGGAGTTCTATCCATTTTAGT
TTCTATACAATGCTATGGGATCATTCTCGTCATTAAAATATCCACGTCAATTAGATCATTCACAGATAGATCTCTAAGTGCAAACGAAATATTTCCTACA
ACTATCGTGAATCAAATTTCTTCTAAATTTGGACAAAATTGGGTGAGCCCATATGACTACAAAAGAGTATATCGACACCAATGTTAATAAAAATGACTAC
TTATAACGGCTACTTTCTCTTGTTACAAAGATATTATTATGCATTTTTAATGGGGGTCGAACCCAAACAAAAAGCCCCTAGTGCTATATGAATAAGTTAA
GACAGCCCACCTTGCTCTGTTTTATTAAATCAAAATGAATTAAAGATTCAGGGTAAAAACAATTTCCATAAGAAAAAAACAAATTAAAAAAGTTACAAAA
TTAATAAAAATGTACCGAACAATCCGTCGCCACCGGCCCAACCCCATAGACATAATAAAGATGCTTTCCTTAAATAAGGTAAATGTATAATTTCCCAGCC
CCACTTTTTCAAAAACCCTCTATTCTATTCACTTTAATTCTCACTCCCTTTTCATATTCTCTCCCTAAATCTGTTTTATTTATCTCTCTCTTTCTTTAAG
TCGTATATATTTTATATATCTTCAG
>LE_HBa0101F20_SP6_56726 (trimmed for quality and cloning vector)
CTATCC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.269117
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0101F20
Clone
Clone name
hba-101f20
LE_HBa0101F20
P101F20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found