Clone Read LE_HBa0088D09_SP6_55840

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0088D09_SP6_55840
Primer
SP6
ID from Seq. Facility
LE_HBa_088_D09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
610 trimmed for vector and quality, 944 raw
Sequence
>LE_HBa0088D09_SP6_55840 (raw untrimmed)
CCCGGGGTTTCCCGTGGTTGGGCTGGAAGCAGAACCCAGTTGTTTGAAAGATTGTCTGGCGGCCGGATACATCCACCCTGCTGGGGCCCAAGCCCGTGGA
TGTCAACTCCATATTCTACAGACCGGAGCAGAGATGTGCTTATTATTCCAACAGTGTTGGACATGATACTGAAGACTGCATCAACCTCAAGCACAAGATC
CAGGATCTGATTGACCAGGAAGTGGTCTCCCTTCAGCCTGCGGCGCCGAACGTCAACGCTAATTCGTTGTTGAATCATGGGGGTGAAAACACCAACATGA
CTGAAACAGACGAAGATGGCGGGGAAGGAATCTATGGCCTTTTCAAGGAGAACAATTCCATCATCGAGGAGGAGGCTGAGCCAGCTGGCATTCGTGACGC
GCAACCAGGGGAGATGCTACAAAATTTGACGTCTACGACGATCCTGATGTCCTAAACTCTGTGGTAGAAAGGAGTTATTTTGTGCATACCAAAATCGGTG
GTCGTCCGGAAGGCCTAAGACCCACCATTTCTGCATTTTCTTAATTGCTTGAATTTTGAATTTTCGTCCTAATGTTTTTAAAAGGGCGACACGGCCCTTT
GCCATGACCCAAACTCGCATTTCGTTTGATTTAAGTGAAGGCCCTCCTTATTTTGACTTTGTTTATTTTAATTGCTTGTTATATTTTACTTTTCTCAATT
TTTGGCTGTTCATGATTTAAACACCCTCATTCTATAACCCGGTCAAGGTCATGTCCTGCTATTCACCCAACAAGCAATAATATCGATATGGCAACCAAGT
TAAGCAATATGAACACACAAATGGGGGATGCTTTGTTGCATATTCTCTTCAATCTTCCTCTCACAAGTAATTTGAATTCTAGTTTTGTACATATCTTATC
CGTCATGTGATATGCCCGAGTACCTTTAAGAACAGTCAACCATA
>LE_HBa0088D09_SP6_55840 (trimmed for quality and cloning vector)
GAACCCAGTTGTTTGAAAGATTGTCTGGCGGCCGGATACATCCACCCTGCTGGGGCCCAAGCCCGTGGATGTCAACTCCATATTCTACAGACCGGAGCAG
AGATGTGCTTATTATTCCAACAGTGTTGGACATGATACTGAAGACTGCATCAACCTCAAGCACAAGATCCAGGATCTGATTGACCAGGAAGTGGTCTCCC
TTCAGCCTGCGGCGCCGAACGTCAACGCTAATTCGTTGTTGAATCATGGGGGTGAAAACACCAACATGACTGAAACAGACGAAGATGGCGGGGAAGGAAT
CTATGGCCTTTTCAAGGAGAACAATTCCATCATCGAGGAGGAGGCTGAGCCAGCTGGCATTCGTGACGCGCAACCAGGGGAGATGCTACAAAATTTGACG
TCTACGACGATCCTGATGTCCTAAACTCTGTGGTAGAAAGGAGTTATTTTGTGCATACCAAAATCGGTGGTCGTCCGGAAGGCCTAAGACCCACCATTTC
TGCATTTTCTTAATTGCTTGAATTTTGAATTTTCGTCCTAATGTTTTTAAAAGGGCGACACGGCCCTTTGCCATGACCCAAACTCGCATTTCGTTTGATT
TAAGTGAAGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.988367
Expected error %
0.313255
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 133 E Value 4e-30 Identity 78.50% Align. Length 255bp (41.80%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0088D09
Clone
Clone name
hba-88d9
LE_HBa0088D09
P088D09
Clone type
BAC
Contamination
none
Estimated length
121,743
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found