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Clone Read LE_HBa0088A08_T7_55695

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0088A08_T7_55695
Primer
T7
ID from Seq. Facility
LE_HBa_088_A08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
697 trimmed for vector and quality, 906 raw
Sequence
>LE_HBa0088A08_T7_55695 (raw untrimmed)
CATTAACTCGGTCCGCGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGTCGAGCTTGTAGTCGGTAGAAAGTAGACGATAGTTAGACAATGCA
AGCTCATAATCATGTAACATGAAGGCATAATCACCCAAAACTCTTATTTGTGATTCAATGGAGCTGAAAGTATACCTTGAAAAGCAATCACAAAGTCTCA
TTAGTCATTTAAAGAAAAATGAAAACACAACCACGTCACAAACTAGACGAGAGATGAGCTTGCAGAATTACGTTGGACCAGCTGGGTTTTCTGGTGCATC
TTCTTTACCCTTTCTCCACCACAAGTTTTTTATTTGGTTTCTAAAACCTTTCCTTGTTGCAGAAACCTGAAATTTAGCTTTAAGTAAGAAAAAACCGATA
GAAGTAACATACATGTTATCATCAACTTCTAAGATTTAAAAAAGTAAAATGAAATTCCAAACACCAGTCAGGGTTGAGGGGTAGATACCTGCTGGTTAAG
CAGACGAATTTTTTGCTCCATATGAGGAATAATATGTTTAGACGATAGATCTTGTACAAATTTTTTCAGCTGCTCAATTCAACACACATGTAAATAATTA
CTTATATCAAGGAGAAGGATGTTGATGACCAGCTATCCTAAGAAAGTACCTCTAAGTTCAGGCCATACAAGGTTCAGGAACAAATACCTCATCCAAGTCA
TCTGAGCTAAGGAAGCAACGTAACTGCTGGCCATGTGAAATATCAGTTTTCTGGAAGACACAAGAAAATATTTTTTCTTTAATTCACCTAATAAACAAGA
TAACAAAGCCCAAAAAAATGATGTGAAAAAAATAGCCTCAAAAGGTCCCTTACATAACAGACATAGGTTTCCTGCCCTTCTAGCCTCCTTGGAGGATTTA
TAATAA
>LE_HBa0088A08_T7_55695 (trimmed for quality and cloning vector)
AGCTTTGTCGAGCTTGTAGTCGGTAGAAAGTAGACGATAGTTAGACAATGCAAGCTCATAATCATGTAACATGAAGGCATAATCACCCAAAACTCTTATT
TGTGATTCAATGGAGCTGAAAGTATACCTTGAAAAGCAATCACAAAGTCTCATTAGTCATTTAAAGAAAAATGAAAACACAACCACGTCACAAACTAGAC
GAGAGATGAGCTTGCAGAATTACGTTGGACCAGCTGGGTTTTCTGGTGCATCTTCTTTACCCTTTCTCCACCACAAGTTTTTTATTTGGTTTCTAAAACC
TTTCCTTGTTGCAGAAACCTGAAATTTAGCTTTAAGTAAGAAAAAACCGATAGAAGTAACATACATGTTATCATCAACTTCTAAGATTTAAAAAAGTAAA
ATGAAATTCCAAACACCAGTCAGGGTTGAGGGGTAGATACCTGCTGGTTAAGCAGACGAATTTTTTGCTCCATATGAGGAATAATATGTTTAGACGATAG
ATCTTGTACAAATTTTTTCAGCTGCTCAATTCAACACACATGTAAATAATTACTTATATCAAGGAGAAGGATGTTGATGACCAGCTATCCTAAGAAAGTA
CCTCTAAGTTCAGGCCATACAAGGTTCAGGAACAAATACCTCATCCAAGTCATCTGAGCTAAGGAAGCAACGTAACTGCTGGCCATGTGAAATATCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.964026
Expected error %
0.386852
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g16280.1 Score 47 E Value 1e-13 Identity 59.40% Align. Length 301bp (43.19%) Frame 2
68418.m01901 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT75248.1| Score 112 E Value 7e-34 Identity 57.30% Align. Length 686bp (98.42%) Frame 2
expressed protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC01869.1| Score 47 E Value 5e-12 Identity 59.40% Align. Length 301bp (43.19%) Frame 2
putative protein [Arabidopsis thaliana] ref|NP_197132.1| expressed protein [Arabidopsis thaliana] pir||T51498 hypothetical protein T21H19_200 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0088A08
Clone
Clone name
hba-88a8
LE_HBa0088A08
P088A08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found