Clone hba-88a8
 Clone and library
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Clone and library
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| Physical mapping
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| Fingerprint Contig Builds (FPC) |
- not present in Tomato FPC (AGI 2005)
| Marker matches - overgo what's this? |
Plausible matches
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Additional Info | ||||||||
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Conflicted matches
None
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| Marker matches - BLAST |
| Marker | Evalue | Identity % | Score | Params |
|---|---|---|---|---|
| C2_At2g30200 | 4e-08 | 1 | 54.00 | evalue cutoff: 1e-10; min len = 25; min identity=0.96 |
| Marker matches - manual |
| Physical map (from marker matches) |
| FISH map |
| FISH images |
| SC Spread ID | Images | Distance from centromere (percentage of arm length) | ||
|---|---|---|---|---|
| 675-05 1 | Composite | Fluorescence | Phase | 91.9% |
| 675-17 1 | Composite | Fluorescence | Phase | 88.5% |
| 675-24 1 | Composite | Fluorescence | Phase | 89.4% |
| 675-35 1 | Composite | Fluorescence | Phase | 88.3% |
| 675-36 1 | Composite | Fluorescence | Phase | 87.1% |
| 675-43 1 | Composite | Fluorescence | Phase | 86.5% |
| 675-47 1 | Composite | Fluorescence | Phase | 85.9% |
| 675-55 1 | Composite | Fluorescence | Phase | 90.0% |
| Mean±sd | 88.5%±2.0% | |||
Given an estimated length of 6.7µm for chromosome 1P and the mean percentage above, this BAC is approximately 5.9µm±0.1µm from the chromosome centromere.
1Experiment conducted in the lab of Stephen Stack at Colorado State University.
| IL Mapping |
| Sequencing
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This clone is not assigned to any sequencing project.
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Sequencing Project
none
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HTGS phase
none
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Sequencing Status
none
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Sequencing Organization
not recorded
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Full Sequence
Sequence not available.
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End Sequences
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Warnings
none
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FTP | |
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Chromosome Assembly
this clone is not part of a chromosome assembly
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| Annotations
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Browse
LE_HBa0088A08 has no browsable sequence annotations
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Download
temporarily unavailable
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