Clone Read LE_HBa0067A09_T7_51089

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067A09_T7_51089
Primer
T7
ID from Seq. Facility
LE_HBa_067_A09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
706 trimmed for vector and quality, 795 raw
Sequence
>LE_HBa0067A09_T7_51089 (raw untrimmed)
GCTGGGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCGGGTGTCAGTTGAAGCTGAATATTCTTAGCTTTTGTGAAACTAAGTGTC
AATGGCTTGAAGTACCTCGTAGCATCTTTAAGGGATTTGAAAGGTTTGGAGCCTTTCCAGCAGACGGGCAAACTTTTGTCGTTCACTGCATCAGTCAGCT
GCTTTGCATCTATGTTTTTCTTAATCTGAAATCAGAAATATTGTAAGTCCTAAGCCAAAAAGATGATAAGCATATATGATGTAGTTTTTTTCTGATCTTA
CCGAAGACAACAGAGTTTTGTAAGCTTCGGAATTGAAGTAGGTAAAGGTACTTCCACTGTCTAAAATTATCGGTAGACTCTTCATCCCAGTTGCCTGCCC
ACCAAAAAGGAGATCTGCCGGTCCCAAAGAATAATGTTTCCTGAAACGATAGTAATCCAGAAAGTTTATTCACATCTTGCATGCTAAGTGCAAATTTTCA
TATACAAAAGCGCCAACTACAGATAAAACGTACTCTGAAGATTCACAGACGATAGGTGACCAAACAATCCCAGAAGACGGGACAACATCATCTCCAAGGA
AAAGAAAACCTCCACCTTGCCCGCTTAAACAGTGACCTACTACATTCCGGATAAAACCCAAGCTACTCAACTGTGATACTATGCTTGATTTTCCATTCCC
TAGGCCAAGAATTCCATCCGTATAAGGTGCATGCTCAGAGGCTGGGACTTCTTGATATTACCCCAACTACCGAAGGGAAATCAAACTCATGAATC
>LE_HBa0067A09_T7_51089 (trimmed for quality and cloning vector)
AGCTTCGGGTGTCAGTTGAAGCTGAATATTCTTAGCTTTTGTGAAACTAAGTGTCAATGGCTTGAAGTACCTCGTAGCATCTTTAAGGGATTTGAAAGGT
TTGGAGCCTTTCCAGCAGACGGGCAAACTTTTGTCGTTCACTGCATCAGTCAGCTGCTTTGCATCTATGTTTTTCTTAATCTGAAATCAGAAATATTGTA
AGTCCTAAGCCAAAAAGATGATAAGCATATATGATGTAGTTTTTTTCTGATCTTACCGAAGACAACAGAGTTTTGTAAGCTTCGGAATTGAAGTAGGTAA
AGGTACTTCCACTGTCTAAAATTATCGGTAGACTCTTCATCCCAGTTGCCTGCCCACCAAAAAGGAGATCTGCCGGTCCCAAAGAATAATGTTTCCTGAA
ACGATAGTAATCCAGAAAGTTTATTCACATCTTGCATGCTAAGTGCAAATTTTCATATACAAAAGCGCCAACTACAGATAAAACGTACTCTGAAGATTCA
CAGACGATAGGTGACCAAACAATCCCAGAAGACGGGACAACATCATCTCCAAGGAAAAGAAAACCTCCACCTTGCCCGCTTAAACAGTGACCTACTACAT
TCCGGATAAAACCCAAGCTACTCAACTGTGATACTATGCTTGATTTTCCATTCCCTAGGCCAAGAATTCCATCCGTATAAGGTGCATGCTCAGAGGCTGG
GACTTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.976427
Expected error %
0.266417
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g44130.1 Score 107 E Value 2e-35 Identity 36.20% Align. Length 696bp (98.58%) Frame 2
68414.m05097 nucellin protein, putative similar to nucellin GI:2290202 from [Hordeum vulgare]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g77480.1 Score 98 E Value 3e-36 Identity 35.10% Align. Length 699bp (99.01%) Frame 2
68414.m09022 nucellin protein, putative similar to nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare] (nucellin: similar to aspartic protease and its specific expression in nucellar cells during degeneration)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_175079.1| Score 107 E Value 8e-34 Identity 36.20% Align. Length 696bp (98.58%) Frame 2
nucellin protein, putative [Arabidopsis thaliana] gb|AAG50556.1| nucellin, putative [Arabidopsis thaliana] pir||F96505 probable nucellin [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD80835.1| Score 100 E Value 2e-34 Identity 35.70% Align. Length 663bp (93.91%) Frame 2
nucellin-like protein [Daucus carota]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067A09
Clone
Clone name
hba-67a9
LE_HBa0067A09
P067A09
Clone type
BAC
Contamination
none
Estimated length
72,281
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found