Clone Read LE_HBa0067A09_SP6_51088

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067A09_SP6_51088
Primer
SP6
ID from Seq. Facility
LE_HBa_067_A09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
681 trimmed for vector and quality, 799 raw
Sequence
>LE_HBa0067A09_SP6_51088 (raw untrimmed)
AAAAATGTCTTNCTCCTGCTATTGANANTNGGGAATCGGGACTTGATAAACTGGAAATCTTCCCAGGTGGCTTCTTCAGGTAACATGTTCGCCCATTGCA
CCAAGATCTGTGTTGCCGCAGTGTCTCTTCTCTTGATCATTCTCCTGTCTAACACTGCCACAGGTTCCACCAATGGTTGGCCATTAGATGAGCAAAGAGG
AGGGTCTATGGATGGAATTGTTTGTTTCCCAACTTTTTTCTTAAGTTGTGAAATGTGGAACACAGGATGTATTTTTGTTGTCGGGGGTAACCTCAGCTTA
TAGGCCACAGGTCCAATCTTTTTGACGATTTGATACAGCCCATAGAATTTTGAAGCTAACTTGAGGTTCTTCCGTATAGCTACTGAAGCTTGTCTATATG
GTTGTAGTTTCAAAAACACCCAGTCCCCTTCTTCAAATTCCCTTTATGTTCTTTTCTTATAAGCATTCATTTTCATTCTGTTTTGTGCCTTTGCCAAATT
TTCCTTTAACACTTTAGCCATAATTTGCCTATCTTTGAATACTTGATCAATAACATATACTTTAGGTTGTGCATAATTAACTCGAATGAAAGTTGTGGAG
GGTCATAACCATAGACTACCTTGAAGGGAGTCATTTTTAGTGATGAATGGTAGTTGCTGTTGTACCAATACTCAGCTAATAAGAGCCACTTGATCTAATC
CTTTGGCTTATGTCCCGTCATACACCTTAGGTAATTTTCTAGACACTTGTTCAATCTTTCAGTCTGCCCCTCAGTTTGTGGATGGGAAACAGAACTATA
>LE_HBa0067A09_SP6_51088 (trimmed for quality and cloning vector)
TCGGGACTTGATAAACTGGAAATCTTCCCAGGTGGCTTCTTCAGGTAACATGTTCGCCCATTGCACCAAGATCTGTGTTGCCGCAGTGTCTCTTCTCTTG
ATCATTCTCCTGTCTAACACTGCCACAGGTTCCACCAATGGTTGGCCATTAGATGAGCAAAGAGGAGGGTCTATGGATGGAATTGTTTGTTTCCCAACTT
TTTTCTTAAGTTGTGAAATGTGGAACACAGGATGTATTTTTGTTGTCGGGGGTAACCTCAGCTTATAGGCCACAGGTCCAATCTTTTTGACGATTTGATA
CAGCCCATAGAATTTTGAAGCTAACTTGAGGTTCTTCCGTATAGCTACTGAAGCTTGTCTATATGGTTGTAGTTTCAAAAACACCCAGTCCCCTTCTTCA
AATTCCCTTTATGTTCTTTTCTTATAAGCATTCATTTTCATTCTGTTTTGTGCCTTTGCCAAATTTTCCTTTAACACTTTAGCCATAATTTGCCTATCTT
TGAATACTTGATCAATAACATATACTTTAGGTTGTGCATAATTAACTCGAATGAAAGTTGTGGAGGGTCATAACCATAGACTACCTTGAAGGGAGTCATT
TTTAGTGATGAATGGTAGTTGCTGTTGTACCAATACTCAGCTAATAAGAGCCACTTGATCTAATCCTTTGGCTTATGTCCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959735
Expected error %
0.388078
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV24812.1| Score 171 E Value 6e-53 Identity 51.20% Align. Length 670bp (98.38%) Frame 2
putative polyprotein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP68389.1| Score 171 E Value 2e-51 Identity 51.20% Align. Length 673bp (98.83%) Frame 2
putative polyprotein [Oryza sativa (japonica cultivar-group)] ref|XP_469313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067A09
Clone
Clone name
hba-67a9
LE_HBa0067A09
P067A09
Clone type
BAC
Contamination
none
Estimated length
72,281
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found