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Clone Read LE_HBa0066J09_T7_50753

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066J09_T7_50753
Primer
T7
ID from Seq. Facility
LE_HBa_066_J09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
758 trimmed for vector and quality, 863 raw
Sequence
>LE_HBa0066J09_T7_50753 (raw untrimmed)
CCCGGTTCCCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGCTGAAGCTGAATACATGAGCATTTCTACCACTGTAACAGAGATTATATG
GCTGGAAAAAAAAAGTTTAATGGAGGAGCTTGACATTGAAGTTTCACTACCTATCAACATACATACTGATAACAAATCTGCTATACAACTTGCAGCCAAT
CTGGTCTGTCATGAAAGAACAAAACACATTGAGATTGATTGTCATTTTATCAGAGAAAAAATCACACAAGGATTAGTATCTACCAAGTACATTCCGACAC
AAGATCAGCCAGCTGATTTGCTTACTAAAGGACTTACAAAAGTGCAACTGCAACATCTTAGCTCCAAGCTAGGAGTTCTGAACATCTTTTCACTTCCTAT
CTTGAGGGGGAATGTTGAGAATGAGAACAACAAAGAAGAATCAAATACATGAACCTGGTTCTTATATATGTTCCCTTAACAATGTTACTGTGTAACCTAC
TTTCAATAATTCGTTAGTTAGTTAGTTACGAATAACTATAAGTTTGTTAGAATTAGAAAATATGATATGATATTACAACTATTATAAATATGAGATCAAC
AATACAACTACTCAATAATTTTGGAATAACAAATATTCTTTTCTTTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTTACATATAAATCT
GCAGTTTCCATATTCTTGGTCCATGAAAGAAGAATTAAGCCAACATGAGGGACGTGTTGATCAGACATAATTTAAGCAAATAAAAATTGTGTTTTTTATC
TAACAATTCCCATCTTTTTAAATGAGCCTGAATCAAATTAGGTTAAAAAAATAATAAAATGAA
>LE_HBa0066J09_T7_50753 (trimmed for quality and cloning vector)
AGCTTAGCTGAAGCTGAATACATGAGCATTTCTACCACTGTAACAGAGATTATATGGCTGGAAAAAAAAAGTTTAATGGAGGAGCTTGACATTGAAGTTT
CACTACCTATCAACATACATACTGATAACAAATCTGCTATACAACTTGCAGCCAATCTGGTCTGTCATGAAAGAACAAAACACATTGAGATTGATTGTCA
TTTTATCAGAGAAAAAATCACACAAGGATTAGTATCTACCAAGTACATTCCGACACAAGATCAGCCAGCTGATTTGCTTACTAAAGGACTTACAAAAGTG
CAACTGCAACATCTTAGCTCCAAGCTAGGAGTTCTGAACATCTTTTCACTTCCTATCTTGAGGGGGAATGTTGAGAATGAGAACAACAAAGAAGAATCAA
ATACATGAACCTGGTTCTTATATATGTTCCCTTAACAATGTTACTGTGTAACCTACTTTCAATAATTCGTTAGTTAGTTAGTTACGAATAACTATAAGTT
TGTTAGAATTAGAAAATATGATATGATATTACAACTATTATAAATATGAGATCAACAATACAACTACTCAATAATTTTGGAATAACAAATATTCTTTTCT
TTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTTACATATAAATCTGCAGTTTCCATATTCTTGGTCCATGAAAGAAGAATTAAGCCAAC
ATGAGGGACGTGTTGATCAGACATAATTTAAGCAAATAAAAATTGTGTTTTTTATCTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.937654
Expected error %
0.538051
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 69 E Value 2e-12 Identity 12.30% Align. Length 350bp (46.17%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 148 E Value 2e-34 Identity 19.70% Align. Length 365bp (48.15%) Frame 2
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO26684.1| Score 113 E Value 6e-24 Identity 15.20% Align. Length 347bp (45.78%) Frame 2
gag-pol polyprotein [Vitis vinifera]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066J09
Clone
Clone name
hba-66j9
LE_HBa0066J09
C03HBa0066J09
P066J09
Clone type
BAC
Contamination
none
Estimated length
115,324
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found