Clone Read LE_HBa0066E24_T7_50543

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066E24_T7_50543
Primer
T7
ID from Seq. Facility
LE_HBa_066_E24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
659 trimmed for vector and quality, 783 raw
Sequence
>LE_HBa0066E24_T7_50543 (raw untrimmed)
TGGATCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGGAAGGTTTGTCCTTGTTGAGTAAGTTGGAGGTACTTGACACAAGTGGGTGC
AGAAGCATTGGAAACCCCTGTCTCTTTGTCATATCAAGAGTTACTACACTCACAAAACTAAACTTAGCAGAAGCTGATATCACCGACAAGGGTCTTGCTT
TGCTTGGTATGGGAAACTTGGGCATTACACAGTTGTGCATCAGAGGCTGTAAGAGAGTAACTGATAAGGGAATTGAGCGTTTATTTTGTGCTGAAGGAAA
AATTGGCAAGACGTTATCATTGTTGGATGTCAGTCGCATGCCCGGAATAACTGATGCAGCTATCTTTACCATTGCATCTGCTGCTAAAGCATTAACTGAT
TTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTGAAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTT
ATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTTTCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGA
TTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTGTTTTGATGGCTGTGAATTTGGGTGCCATGATGGGTGGGAATTTCATCGGATCATTTAT
TCATCATTGACAGAAGGGGGGATTTTGTAAGAGGAGCAGATTAAGATAGGCTGGAGACGCCAAATTTCCTTTTTACATACAAG
>LE_HBa0066E24_T7_50543 (trimmed for quality and cloning vector)
AGCTTTGGAAGGTTTGTCCTTGTTGAGTAAGTTGGAGGTACTTGACACAAGTGGGTGCAGAAGCATTGGAAACCCCTGTCTCTTTGTCATATCAAGAGTT
ACTACACTCACAAAACTAAACTTAGCAGAAGCTGATATCACCGACAAGGGTCTTGCTTTGCTTGGTATGGGAAACTTGGGCATTACACAGTTGTGCATCA
GAGGCTGTAAGAGAGTAACTGATAAGGGAATTGAGCGTTTATTTTGTGCTGAAGGAAAAATTGGCAAGACGTTATCATTGTTGGATGTCAGTCGCATGCC
CGGAATAACTGATGCAGCTATCTTTACCATTGCATCTGCTGCTAAAGCATTAACTGATTTATCTCTAAGGTACTGCTTTCATGTGACAGATGCTGGTGTG
AAGATGTTGTTGGATAGACCAAATCACAAGGTTAGTCTACTGCAAAAGCTTGATCTTTATAAATGTCGCGGTCTGTCTGGTGATTGGATAATGTCTTCTT
TCTGTGGTTTGCGCTGGCTTGGTGTTGGAGGTACTCTGTTAGTCAATAAAAGAGACGATTTCTCCACAATATGCAATGTGCGACCCTGGCTGGTTGTGTG
TTTTGATGGCTGTGAATTTGGGTGCCATGATGGGTGGGAATTTCATCGGATCATTTATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963734
Expected error %
0.407438
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g55590.1 Score 189 E Value 1e-48 Identity 15.30% Align. Length 644bp (97.72%) Frame 3
68414.m06363 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g17020.1 Score 94 E Value 5e-20 Identity 11.90% Align. Length 638bp (96.81%) Frame 3
68415.m01962 F-box family protein (FBL10) contains similarity to F-box protein Partner of Paired GI:10441427 from [Drosophila melanogaster]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC36400.1| Score 418 E Value 1e-116 Identity 30.90% Align. Length 653bp (99.09%) Frame 3
hypothetical protein [Lycopersicon esculentum] emb|CAC36396.1| hypothetical protein [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC36388.1| Score 195 E Value 7e-49 Identity 15.70% Align. Length 644bp (97.72%) Frame 3
hypothetical protein [Capsella rubella]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066E24
Clone
Clone name
hba-66e24
LE_HBa0066E24
P066E24
Clone type
BAC
Contamination
none
Estimated length
151,556
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found