Clone Read LE_HBa0066E24_SP6_50542

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066E24_SP6_50542
Primer
SP6
ID from Seq. Facility
LE_HBa_066_E24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
776 trimmed for vector and quality, 826 raw
Sequence
>LE_HBa0066E24_SP6_50542 (raw untrimmed)
AAGAATTTTCCGTTCCATTTTTCTGAGCTTCAATTGCAAGACTAGTCGGCATTTCTACAAATATANTGGGGTAAGCCTTCTATTGCGTCTTTGCAGAAGA
AAATATATTGTGAAAATAGACTTACGACGGCGTTGAACAGCGTGGACTTGCCGACATTAGGAAGGCCAACGATGCCAGCTCGCAAACTCATGCTTATCTT
AGCGACGGAGAAGCGCCTTTTGATGAGTACCACAGGATGCGTAGATTCTGAGAGTCGTAACCACTGGTGAGAAGAACCATTGAGGAAAGAAGACTTGAGC
GGAATTGCCATGGAAGGAAGAAGCTGAGAGCAAGCCATTCTCGCCATTTTACCACTAGCAAGTTGAAGTGCTTATTGAGTGGTACACACAGCGTTGCGGC
TATCTATCGCCGTGCTACAACTACAAATATTTCTCGGGTTTAACTCAGCGACGACGCTACATGTAAATTAGAAAATTACCCAAATAATTGCACCAAAATT
GTATTTGAGCCCAAAAATTTGGGAAAATGAAACAAAACTAGTCCATGCCATTGCATTATTTAAAATCCCTTTATTTAAATGATGAAGTATATATGACCTT
TTTATTTAAGCAAAGGAAAATTAGAATTAATATCGAATGTAAACATGATTGTAAAATATGCTAGAGTTAAGCTAAATTAGTTAAATTAATTTGAGTTTCT
TTGTTTAAAATAAAAATGATGCAAGTAAATAGAAGATGAGTCTATTCGAGGGAAGAAAATAGCCATATATGTATACCCTTGGTAAGAGTTGTATAAAAGT
TGAGCTCAAAGACTTTTAATTGCTCT
>LE_HBa0066E24_SP6_50542 (trimmed for quality and cloning vector)
TCTGAGCTTCAATTGCAAGACTAGTCGGCATTTCTACAAATATANTGGGGTAAGCCTTCTATTGCGTCTTTGCAGAAGAAAATATATTGTGAAAATAGAC
TTACGACGGCGTTGAACAGCGTGGACTTGCCGACATTAGGAAGGCCAACGATGCCAGCTCGCAAACTCATGCTTATCTTAGCGACGGAGAAGCGCCTTTT
GATGAGTACCACAGGATGCGTAGATTCTGAGAGTCGTAACCACTGGTGAGAAGAACCATTGAGGAAAGAAGACTTGAGCGGAATTGCCATGGAAGGAAGA
AGCTGAGAGCAAGCCATTCTCGCCATTTTACCACTAGCAAGTTGAAGTGCTTATTGAGTGGTACACACAGCGTTGCGGCTATCTATCGCCGTGCTACAAC
TACAAATATTTCTCGGGTTTAACTCAGCGACGACGCTACATGTAAATTAGAAAATTACCCAAATAATTGCACCAAAATTGTATTTGAGCCCAAAAATTTG
GGAAAATGAAACAAAACTAGTCCATGCCATTGCATTATTTAAAATCCCTTTATTTAAATGATGAAGTATATATGACCTTTTTATTTAAGCAAAGGAAAAT
TAGAATTAATATCGAATGTAAACATGATTGTAAAATATGCTAGAGTTAAGCTAAATTAGTTAAATTAATTTGAGTTTCTTTGTTTAAAATAAAAATGATG
CAAGTAAATAGAAGATGAGTCTATTCGAGGGAAGAAAATAGCCATATATGTATACCCTTGGTAAGAGTTGTATAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.967725
Expected error %
0.606205
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g56050.1 Score 65 E Value 4e-11 Identity 17.80% Align. Length 224bp (28.87%) Frame 1
68414.m06436 GTP-binding protein-related similar to GTP-binding protein GI:10176676 from [Bacillus halodurans]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066E24
Clone
Clone name
hba-66e24
LE_HBa0066E24
P066E24
Clone type
BAC
Contamination
none
Estimated length
151,556
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found