Clone Read LE_HBa0066E05_T7_50505

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066E05_T7_50505
Primer
T7
ID from Seq. Facility
LE_HBa_066_E05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
771 trimmed for vector and quality, 834 raw
Sequence
>LE_HBa0066E05_T7_50505 (raw untrimmed)
CTTGGGTCCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCACAGGACCTAAAAGACCCTATAGAGGAAAAGAAGGCAGCGAGGGGCTTA
GGTATGTCAGATCTCCTTGTTTAGTTTAGCCTAATATTATCTTGGTTGAACTTGGTTAGACAGTAAAGGACTTGTGAAGTTAGTCGAATAGAAATCTCCT
CTGCATGTGACCCTGCATTGACTGGAATTACACATGCATGCATCTTTTGTCTTCTTTGATCTAGCAAGAATTTTCTGGAGATGATTTTTGTGGTTGCTTG
TCTATGTATAAATAATGTAACGAGTATGTTCCCTGGGAATGAGATCCTGTCTTAACCATATTTCTTGTTGTCATTTATTCCTAATTTCTTGGTGTCACAG
AGTCATGTTGCTTCTTTTTTCTTGGCTCATTTTCTTTTTAATCTATGGAAGAAAGTGCCAAATCCCGCCAGAAGTTGGATGTAGAGATTTTGTTAAATTT
ACTTATTAAAAGAGACTTTGCTTCAACCTACTGTTGTTTCTCTTTCTAGTATATGTTTGTGTCACGACGTAATGACCCTCAAAGGTTCACCTCTTTCTCA
GGGGCATCGTTACAAAGGCAGGGCAAGTACAAGGAAGCGATTGAATACCACTCTATGGTTCTTGATATCTCGGGAAGAAATGGGGAGGAGTCTGGCAGCA
CAGAAGCTTATGGAGCAATAGCTGATTGCTATACCGAGCTTGGAGACATAGAACGAGCTGCAAAATACTATGACAAATACATTGCAAGGCTACAGAGTGA
CTAAGCCATCTACAGAAAGACTCCATGCCTTTCT
>LE_HBa0066E05_T7_50505 (trimmed for quality and cloning vector)
AGCTTGCACAGGACCTAAAAGACCCTATAGAGGAAAAGAAGGCAGCGAGGGGCTTAGGTATGTCAGATCTCCTTGTTTAGTTTAGCCTAATATTATCTTG
GTTGAACTTGGTTAGACAGTAAAGGACTTGTGAAGTTAGTCGAATAGAAATCTCCTCTGCATGTGACCCTGCATTGACTGGAATTACACATGCATGCATC
TTTTGTCTTCTTTGATCTAGCAAGAATTTTCTGGAGATGATTTTTGTGGTTGCTTGTCTATGTATAAATAATGTAACGAGTATGTTCCCTGGGAATGAGA
TCCTGTCTTAACCATATTTCTTGTTGTCATTTATTCCTAATTTCTTGGTGTCACAGAGTCATGTTGCTTCTTTTTTCTTGGCTCATTTTCTTTTTAATCT
ATGGAAGAAAGTGCCAAATCCCGCCAGAAGTTGGATGTAGAGATTTTGTTAAATTTACTTATTAAAAGAGACTTTGCTTCAACCTACTGTTGTTTCTCTT
TCTAGTATATGTTTGTGTCACGACGTAATGACCCTCAAAGGTTCACCTCTTTCTCAGGGGCATCGTTACAAAGGCAGGGCAAGTACAAGGAAGCGATTGA
ATACCACTCTATGGTTCTTGATATCTCGGGAAGAAATGGGGAGGAGTCTGGCAGCACAGAAGCTTATGGAGCAATAGCTGATTGCTATACCGAGCTTGGA
GACATAGAACGAGCTGCAAAATACTATGACAAATACATTGCAAGGCTACAGAGTGACTAAGCCATCTACAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.968675
Expected error %
0.404695
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g14110.1 Score 111 E Value 5e-25 Identity 25.90% Align. Length 200bp (25.94%) Frame 3
68416.m01784 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g14110.2 Score 111 E Value 5e-25 Identity 25.90% Align. Length 200bp (25.94%) Frame 3
68416.m01783 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_918646.1| Score 112 E Value 1e-23 Identity 25.90% Align. Length 200bp (25.94%) Frame 3
P0520B06.12 [Oryza sativa (japonica cultivar-group)] dbj|BAB92188.1| tetratricopeptide repeat(TPR)-containing protein-like [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM65071.1| Score 111 E Value 2e-23 Identity 25.90% Align. Length 200bp (25.94%) Frame 3
unknown [Arabidopsis thaliana] gb|AAL38623.1| AT3g14110/MAG2_6 [Arabidopsis thaliana] gb|AAK96581.1| AT3g14110/MAG2_6 [Arabidopsis thaliana] ref|NP_566478.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066E05
Clone
Clone name
hba-66e5
LE_HBa0066E05
C03HBa0066E05
P066E05
Clone type
BAC
Contamination
none
Estimated length
110,798
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found