Clone Read LE_HBa0066E05_SP6_50504

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066E05_SP6_50504
Primer
SP6
ID from Seq. Facility
LE_HBa_066_E05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
786 trimmed for vector and quality, 942 raw
Sequence
>LE_HBa0066E05_SP6_50504 (raw untrimmed)
CCGCGAGTTGTGGGTTTTTTGGGGAGCTGGTGGACATGATTACGAGATTGTTCCCTTACCAAACAATCCCATAATCGCGCAGATTAAAAATCACAAGGAA
AGGAAAACTATGAAATCAAAGGCAAAGACATGCTTGTATACAACAGTTTCATCCACCATCTTTACTCGTATTACATCCTTGAAGTCAGCAAAAGAGGTAT
GGGATTATCTCAAGAATGAGTATGAAGGGGATGAAAGAATTCGAGAGTTGCAAGTGCTAAATTTAGTACGTGAGTTTGAGCTGCAAAGAATGAAGGAAAG
TGAAACCAGAAAGGAGTATTCTGATCGACTTCTTAATATAGCAAATCGAGTCAGATTGTTGGGTTCCTCTTTTAACGATTCAAGGATTTTTGATAAAATC
CTTGTAATAGTACCTGAAAGATTTGAGGCTACTGTGACAACCTTAGAAAATACTAAGGACTTGTCCAAAATTACACTAGCGGAGCTCTTAAGTGCTTTTC
AAGCACAAAAGCAACAACGTGTAATGAGATAGGAAGGAGTTGTTAAAGGATCCCTATTAGTTAAACATCAAGATGATGGAAGAAACAAGAAGAAGTAGAA
CAAGAAGATACAAGGACAAAATAGTGAGAATTTCGCTAAAAGCAAGAAGGCTAGCTATCCTCCTTGTCGGCATTATGAAAAAAAATGTCACCCTCATTTC
AGATGTTGGAGGAGACCTGATGCAAAATGCAGCAAGTGCAATCAACAGGGTCATGAAGCTGTAATTTGTAAAGCCAAAATTCAGCAGCCTGAATTGAAGC
TCAAGTTGTTGATTGAGAAGATCACCTTTTTGTTGCAACTTGTTTCACAATTTTTGATTCAAGTAAAAGTGGGTTAAGGGATAGTGGTTGATTTAACTAC
TTGACATCTGATAAGATGGTCAAAAAATTGGGGGAACAGGAG
>LE_HBa0066E05_SP6_50504 (trimmed for quality and cloning vector)
GGACATGATTACGAGATTGTTCCCTTACCAAACAATCCCATAATCGCGCAGATTAAAAATCACAAGGAAAGGAAAACTATGAAATCAAAGGCAAAGACAT
GCTTGTATACAACAGTTTCATCCACCATCTTTACTCGTATTACATCCTTGAAGTCAGCAAAAGAGGTATGGGATTATCTCAAGAATGAGTATGAAGGGGA
TGAAAGAATTCGAGAGTTGCAAGTGCTAAATTTAGTACGTGAGTTTGAGCTGCAAAGAATGAAGGAAAGTGAAACCAGAAAGGAGTATTCTGATCGACTT
CTTAATATAGCAAATCGAGTCAGATTGTTGGGTTCCTCTTTTAACGATTCAAGGATTTTTGATAAAATCCTTGTAATAGTACCTGAAAGATTTGAGGCTA
CTGTGACAACCTTAGAAAATACTAAGGACTTGTCCAAAATTACACTAGCGGAGCTCTTAAGTGCTTTTCAAGCACAAAAGCAACAACGTGTAATGAGATA
GGAAGGAGTTGTTAAAGGATCCCTATTAGTTAAACATCAAGATGATGGAAGAAACAAGAAGAAGTAGAACAAGAAGATACAAGGACAAAATAGTGAGAAT
TTCGCTAAAAGCAAGAAGGCTAGCTATCCTCCTTGTCGGCATTATGAAAAAAAATGTCACCCTCATTTCAGATGTTGGAGGAGACCTGATGCAAAATGCA
GCAAGTGCAATCAACAGGGTCATGAAGCTGTAATTTGTAAAGCCAAAATTCAGCAGCCTGAATTGAAGCTCAAGTTGTTGATTGAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956806
Expected error %
0.218107
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR13313.1| Score 254 E Value 1e-66 Identity 17.10% Align. Length 779bp (99.11%) Frame 2
gag-pol polyprotein [Phaseolus vulgaris]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF20282.1| Score 228 E Value 1e-58 Identity 15.00% Align. Length 734bp (93.38%) Frame 2
gag-pol polyprotein [Vitis vinifera]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066E05
Clone
Clone name
hba-66e5
LE_HBa0066E05
C03HBa0066E05
P066E05
Clone type
BAC
Contamination
none
Estimated length
110,798
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found