Clone Read LE_HBa0065J03_SP6_49972

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0065J03_SP6_49972
Primer
SP6
ID from Seq. Facility
LE_HBa_065_J03-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
768 trimmed for vector and quality, 955 raw
Sequence
>LE_HBa0065J03_SP6_49972 (raw untrimmed)
AAAAAAAAAATGGTTTCTTNNGGCTAGTGTACNNNNCNNNCNNGANACNGATAAAAAGTCATCAAGACAATGATGAGAACACTTCTGACACTGACACTCT
CACTAAACGACATAAAATTCTAAGTAATGATCTCATTTTTAAAGATCATGTTTTGCAAAGCAGTTTTAGATAATGATAATTCTGTTGAAAATGCAGAAGA
ATTACTCTTTCATATCGAAGGCGACAATTAACTACTCAATAAAGATATGATCTTTCTGTTCCTGCATAACACCAAAGCAGAACATCAAATGACAAAATGA
TGTAAACTAGGGCTGTTCAAAACCAAATCGATAAAAAAGTATTAGGTTATTGTTTTAGTGGTTTTGATAACGATTTTGATTTTTTTTGTTAATCGGGTTA
TTGGTTCTTAACGGTTTAAAGTTTTGTTCTTAATGGGTTAACCAGTAACCCAATAGTAAATTAAATAATTATATTTATACCATTTTGTATATAAAGTTCT
CGACTTGGAGTTTAATTTCCTAATTTTATTTTTTGGTTGTCTCAAACACTTGATTATTCTACAATGTAAAAGTGTTTGCTTTAGAGCAAGATGTAACTTG
TGAACTCAAGTGCATGGTTTATTTGGTTTGTCACCTTGTTTTTAAATGATTTTCAATGTTTTTTCTTTTGTGTCAAATCTTAACGGTTAAACCGATAACG
ATAAAAAACCGATAAATCAATAACCGATAAAGCCAATATCATAATGGTTCTATAACGGTTTAGCATCTCTACAAACCGATAACCAATAAGCCAACCCAAT
AAACTTCAAAACTGAACCGAACTAGCCGATACACAGCCCTAATGTAAACAGTCAGAAAGCTCTAACATGAATTTTAGGCCCCTTCCTAGGAAAAACAGCA
CTTGAATTACAAAAGTGACCCAAAAAAATGGGGACAAGAACCAAATTACAAATTC
>LE_HBa0065J03_SP6_49972 (trimmed for quality and cloning vector)
GATAAAAAGTCATCAAGACAATGATGAGAACACTTCTGACACTGACACTCTCACTAAACGACATAAAATTCTAAGTAATGATCTCATTTTTAAAGATCAT
GTTTTGCAAAGCAGTTTTAGATAATGATAATTCTGTTGAAAATGCAGAAGAATTACTCTTTCATATCGAAGGCGACAATTAACTACTCAATAAAGATATG
ATCTTTCTGTTCCTGCATAACACCAAAGCAGAACATCAAATGACAAAATGATGTAAACTAGGGCTGTTCAAAACCAAATCGATAAAAAAGTATTAGGTTA
TTGTTTTAGTGGTTTTGATAACGATTTTGATTTTTTTTGTTAATCGGGTTATTGGTTCTTAACGGTTTAAAGTTTTGTTCTTAATGGGTTAACCAGTAAC
CCAATAGTAAATTAAATAATTATATTTATACCATTTTGTATATAAAGTTCTCGACTTGGAGTTTAATTTCCTAATTTTATTTTTTGGTTGTCTCAAACAC
TTGATTATTCTACAATGTAAAAGTGTTTGCTTTAGAGCAAGATGTAACTTGTGAACTCAAGTGCATGGTTTATTTGGTTTGTCACCTTGTTTTTAAATGA
TTTTCAATGTTTTTTCTTTTGTGTCAAATCTTAACGGTTAAACCGATAACGATAAAAAACCGATAAATCAATAACCGATAAAGCCAATATCATAATGGTT
CTATAACGGTTTAGCATCTCTACAAACCGATAACCAATAAGCCAACCCAATAAACTTCAAAACTGAAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.925273
Expected error %
0.192981
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0065J03
Clone
Clone name
hba-65j3
LE_HBa0065J03
C01HBa0065J03
P065J03
Clone type
BAC
Contamination
none
Estimated length
122,170
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found