Clone Read LE_HBa0064M23_T7_49389

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0064M23_T7_49389
Primer
T7
ID from Seq. Facility
LE_HBa_064_M23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
740 trimmed for vector and quality, 783 raw
Sequence
>LE_HBa0064M23_T7_49389 (raw untrimmed)
TTGGGTACCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCGATTCCTGTTTACTCTTTTTTCACTGCTTCAACTATTTTAATGGCGTTCT
CTTTGTACTTACCGACGCTTGATAGTGAAGTTGAAGGCGAATTTGTTGATCTTCCTGAAACTATTCAAACTCCCGGATGTAGCCCAATTCACCCTCACGA
TATCCTCGATCAGGTAAAGTTGTCTATGAAAACGATTAGTTTCACGTGAATACATAACACTAATAAGTTTTGAACTTGTACTTCTAATAAATTCAAGTAT
TAAGTTGAATTCATCAAGTTTAAATTTGAATTCGTATTTTACAGGTGAAAGATAGGAAGAACGAAGAGTACAATTGGTATTTGCTTAACGTGAGCAGGTT
GCCATTAGCAGTGGGGATATTTGTGAACAGTTGGGATGATCTCGAACCTGTATCTCTTAAAGCTCTTAGAGAAAATTTGTTTTTCCAAAATATACCTCTT
CCTCCTGTTTACACAATCGGGCCTTTGATCAAACAAGATGAAGTTGTTACAGAACAAGACGCAGAGATTTTAGCATGGCTGGATGATCAGCCGCCTGATT
CTGTTCTTTTTGTGGTCTTTGGTAGTGGCGGCACCTTGACCAGTGAACAACTCACTGAGTTAGCTTGGGGTCTCGAACTGAGTCAACAAAGGTGATATTT
TACTCGTGTTTTATTTTACGTGATTGAATCATTTTAAAACAAAGTTAAATTATTACTAAATATAGATATGCATTATTTATTTT
>LE_HBa0064M23_T7_49389 (trimmed for quality and cloning vector)
AGCTTTCGATTCCTGTTTACTCTTTTTTCACTGCTTCAACTATTTTAATGGCGTTCTCTTTGTACTTACCGACGCTTGATAGTGAAGTTGAAGGCGAATT
TGTTGATCTTCCTGAAACTATTCAAACTCCCGGATGTAGCCCAATTCACCCTCACGATATCCTCGATCAGGTAAAGTTGTCTATGAAAACGATTAGTTTC
ACGTGAATACATAACACTAATAAGTTTTGAACTTGTACTTCTAATAAATTCAAGTATTAAGTTGAATTCATCAAGTTTAAATTTGAATTCGTATTTTACA
GGTGAAAGATAGGAAGAACGAAGAGTACAATTGGTATTTGCTTAACGTGAGCAGGTTGCCATTAGCAGTGGGGATATTTGTGAACAGTTGGGATGATCTC
GAACCTGTATCTCTTAAAGCTCTTAGAGAAAATTTGTTTTTCCAAAATATACCTCTTCCTCCTGTTTACACAATCGGGCCTTTGATCAAACAAGATGAAG
TTGTTACAGAACAAGACGCAGAGATTTTAGCATGGCTGGATGATCAGCCGCCTGATTCTGTTCTTTTTGTGGTCTTTGGTAGTGGCGGCACCTTGACCAG
TGAACAACTCACTGAGTTAGCTTGGGGTCTCGAACTGAGTCAACAAAGGTGATATTTTACTCGTGTTTTATTTTACGTGATTGAATCATTTTAAAACAAA
GTTAAATTATTACTAAATATAGATATGCATTATTTATTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.959575
Expected error %
0.218016
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g01070.1 Score 107 E Value 9e-24 Identity 16.80% Align. Length 344bp (46.49%) Frame 3
68417.m00145 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g50740.1 Score 101 E Value 4e-22 Identity 15.20% Align. Length 341bp (46.08%) Frame 3
68416.m05552 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC35167.1| Score 110 E Value 3e-23 Identity 17.40% Align. Length 344bp (46.49%) Frame 3
arbutin synthase [Rauvolfia serpentina] sp|Q9AR73|HQGT_RAUSE Hydroquinone glucosyltransferase (Arbutin synthase)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB61023.1| Score 107 E Value 4e-22 Identity 16.80% Align. Length 344bp (46.49%) Frame 3
Similar to UTP-Glucose Glucosyltransferase; coded for by A. thaliana cDNA T46230; coded for by A. thaliana cDNA H76538; coded for by A. thaliana cDNA H76290 [Arabidopsis thaliana] pir||T01732 UTP-glucose glucosyltransferase homolog A_IG002N01.15 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0064M23
Clone
Clone name
hba-64m23
LE_HBa0064M23
P064M23
Clone type
BAC
Contamination
none
Estimated length
76,743
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found