Clone Read LE_HBa0064M23_SP6_49388

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0064M23_SP6_49388
Primer
SP6
ID from Seq. Facility
LE_HBa_064_M23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
702 trimmed for vector and quality, 784 raw
Sequence
>LE_HBa0064M23_SP6_49388 (raw untrimmed)
TAAGGGTTAACCTTTGCCCTGAGACGTGGTTTGAGAGTGGTTGTTGCAGCCTAGATGTACCCAATAAATGCTCTGTGAAGTTGGCACTATTTGAATGGGT
TAATGATTAATGAGTCTTCTACATGAATGTGGATCTTCAAGTTTTGTTGTATGATATGCAGGATTGAGATTATTTCATTTCAATACCTCCTCTATGTTGC
TCTTTGGATAATCTTAAAACATTTTGGCTATATATCCTTTAAATGTTTTTCTTATTTCTGTACGTATTATATGAATGAACTAAATTTCTTTTAAGAGCTC
ATGCAAGACTATCAGCATTGTTAACCAAAAAAATAAGAAAAGACTGGCAGTATATTCCTGATGTATGCATCACCTGTTGGCATGGTGCTTGTTATGTTCG
TTGCAGGAGTGGTGGACATATGTATGCTTGGGACCAGGTGATCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGC
GTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGTGCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAGGTTAGTGCATCCCTATGCAT
GACACGAAACTGATGGATAAACTATGTCGTACAGGTTGATGGTTGTGAAATAATTGATATATATTTTTCTCTTCATGCCTGATTCGAGTAATATTTGTCT
GCAGATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAGTTTTATTCTATCCTGGTCAGGTGTTCTCATCATCTCAGCAACT
>LE_HBa0064M23_SP6_49388 (trimmed for quality and cloning vector)
TGTTGCAGCCTAGATGTACCCAATAAATGCTCTGTGAAGTTGGCACTATTTGAATGGGTTAATGATTAATGAGTCTTCTACATGAATGTGGATCTTCAAG
TTTTGTTGTATGATATGCAGGATTGAGATTATTTCATTTCAATACCTCCTCTATGTTGCTCTTTGGATAATCTTAAAACATTTTGGCTATATATCCTTTA
AATGTTTTTCTTATTTCTGTACGTATTATATGAATGAACTAAATTTCTTTTAAGAGCTCATGCAAGACTATCAGCATTGTTAACCAAAAAAATAAGAAAA
GACTGGCAGTATATTCCTGATGTATGCATCACCTGTTGGCATGGTGCTTGTTATGTTCGTTGCAGGAGTGGTGGACATATGTATGCTTGGGACCAGGTGA
TCCTCATCCCAACTGGCACTTGGGGATGCGAGGCACTCAACACCGTGCTGTGATGTGGCGTGTGTGGAAAGAAGGTGGAACAGGTTTCTTATATTGGGGT
GCCAACTGCTATGAGAAGGCAACAGTTCCTAGTGCTGAGGTTAGTGCATCCCTATGCATGACACGAAACTGATGGATAAACTATGTCGTACAGGTTGATG
GTTGTGAAATAATTGATATATATTTTTCTCTTCATGCCTGATTCGAGTAATATTTGTCTGCAGATTAAGTTCAGGCGCGGCCTTCCTCCAGGTGATGGAG
TT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957923
Expected error %
0.0652596
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g45150.1 Score 138 E Value 1e-36 Identity 93.30% Align. Length 339bp (48.29%) Frame 1
68414.m05176 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF69168.1| Score 138 E Value 5e-35 Identity 93.30% Align. Length 339bp (48.29%) Frame 1
F27F5.22 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP37679.1| Score 138 E Value 5e-35 Identity 93.30% Align. Length 339bp (48.29%) Frame 1
At1g45150 [Arabidopsis thaliana] ref|NP_175129.3| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0064M23
Clone
Clone name
hba-64m23
LE_HBa0064M23
P064M23
Clone type
BAC
Contamination
none
Estimated length
76,743
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found