Clone Read LE_HBa0058J20_T7_46167

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0058J20_T7_46167
Primer
T7
ID from Seq. Facility
LE_HBa_058_J20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
11 trimmed for vector and quality, 2111 raw
Sequence
>LE_HBa0058J20_T7_46167 (raw untrimmed)
GGAGCGGGAGTGATNAANATAGAACTAGNTAGCGCTCNCNAGTCATGNAGCGAGAGATGTGTGNATGTGTATATATATGATANATGGTAATGTAGAGTAG
CGTGGATCTGGTCGGGCGATCGAGCGTGCACAGTTNTGGCGTGTCGGTGCAGTCGTGACAGCGATAGCGCAGCGCGCGTACGCTCTCTACTCGCAGTGTA
GTGCGTCGCTGTGATTGCTAATNGAGACTTGTGTGANNCATGCTCGTGGGCGCNGCTACCGAGGTCGCGCGCTCATTCCGTNGNCTGCGATCGACCGTNA
CNGTCGTCGATGCGCNAGTGTAGTGAGTTACACGTGTATNGCTCTGAGCTNCNTGCANAGACTGTCGCATNCACTGCTGTNTNCTNACAGTNAANANGCA
TGTGCTGCCGCACGCGACTGTGACACNCACGNACAGTACGCCAGTNTNGCAAGCGCGCGCGTACGTNCTGACGACGCTNAGCCGNAACTCACGACTCCNC
CANAGNCTNTCNATNGTGCTGACTGTAATGATGAGTACTTAGATANCTGTTGTCTGTGTNGNGCNANTTTNGCATGATGACGANACTACGAGCTCTGGGN
CNACAGAGTTTNCTGGCTCGTCAGTATATNCTGGTATNNCTNGATGNTNTGNCTANCGGGTNCTNTNGTGCATGCGNAGCGTCGACACTTCTNCNGNGCN
TGCACGGTNCNTGACGCACNTGCNGAAGCACTACANCTTNTTTGCNCNANANCTNATNATCTGACGTGGTACCAGTACACGCACAACTTGTAGTGTNTNC
TGCATATGTNACGTNTGTGNACATAGCTGTGCNCGTNACTGCGCGCGCATTCNCATGCGNCATTGCTGGCTCTGNCACCGTACGATGCGTCTTNCAGCGT
AGTGTATGATCGGCGTAGACGCANANCGTNCACGATNCNAGTGAGCGTNGATNACATATACTNGNGCAGCAGTCGGANTANAGTGATGCGCTNCNGCTCG
AAAGAGCAGGTNGNATAGACNGCTACTACACTGTGATTGGATGCAGCNTNCTATTTTGACGTGGCGTGCATACGCGANATTCGTGCACACTGNCGCACAN
GTGAGCGATACGTGNCATCGATGNGGAAAGTGCAGANATGCAAGTGTGACGCTNNAGCGCGGCTGACGGTGACTGNCGACAGTGCGCGGATNACTGATNC
TGCGATGCTGCTGGCGTTTNACGCNTTAGCCGTTGATGCGCGTANTCCTGATGCATTGTCATCTNACTCTTACGGTGTTAGCNACGCTGATGCGTACGAT
CGNGCCTCAGCGTACGTCTGTGCATATGTCNATACGTGTATNAGTAAANTGCGATCNTACTACATNCATTANATCATATCGATCGNTAANGTCCNCTAAT
GCTGAGCGTGCTTGCTCTGTTGTTNANTGACTGCTACTATGCNCGCTACNATATNTGCTGACNCTNACTTTGNCACATCCCGCGTGGATGCTGCTATCTG
ACNCTCTACCTNCGANCACGNTACGNCNCACGNCGACTGTTGCNTNCGGNAACACTACTTNACTCGCGACTCTACTATCAGCACATTGCGTGACTACGTA
CATNGCTATGCTNATGCGTCTGTCTCCACTGCGCTACATGATATACGCGCATAGATCCTGTGNCTGGATGAGNGCCNAGACCCTCCACGCACCACGANAT
CGANTGCTACGAAACACTGCANANCGACGCNACAANCATCNTCGCATTTGAACTGAAGTGACACTATAATGCACCACGACAGCTCACTCCATCACACNGA
CATACTCCTNCTNCTACATGCTATACATGACTCTACATCATGCTCTTACACATGACAGCATGGATATGCTCATATGCATACACGTATACNTCTGACTCAC
GACAATGATTTCTTACATTTACTATACTGTCACACTCTCAAACGCTTCTTAATGCTTGACATCTTATGTATGCACATGCGCATACATCACTACTGCATAC
GAACTTCTACGCGCACTGCTNCCTGCATCTTCTCCTACTTCACGGATGCGTAGTATCTATCACNCANGGCTCTATAACATCATTTCTCCACCTCTCGAAC
ACATGCCGCTG
>LE_HBa0058J20_T7_46167 (trimmed for quality and cloning vector)
ATATATATGAT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.957327
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0058J20
Clone
Clone name
hba-58j20
LE_HBa0058J20
P058J20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found