Clone Read LE_HBa0058J20_SP6_46166

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0058J20_SP6_46166
Primer
SP6
ID from Seq. Facility
LE_HBa_058_J20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1896 raw
Sequence
>LE_HBa0058J20_SP6_46166 (raw untrimmed)
CATCGCGAGCGGAGAGGCGCTGTTAATGATACGCGCTACAGTGTAGCGTGCAGCGTCTGTATATAGTCTGTATGTATAGTCGANCGCAGCTAGCGAGAGT
ATAGNTATATCGTACTATTNTACGCTCGTGTTGTGTTGCAAAGATACCCCNCTGACATAGTGCATCGTATGAATCACATCTTCTACGTATAACTCGACCA
TTTCGTATTACCGATATNATNCTGACCTNCTCACNANCAACCAAGAGATNANCNAGNCTNTTCTANACCAAANAGTAGCGTGCGACATGCCANACAGNCT
ACGTACGTACGAATGTNCTCGATNTCTGTATGACTTATCTGNCANTCAGACAGCTACGATATACTCACGTACATCTACAGTACTGNACAGATCAGCACGA
TATGTCTGACGTACACAGGGACGGGACGTATGACTNCNCATGGNCATACGCGCACTCGCTACTGAGTGATGCAAGTCAAANGAACTNGTGCNGACATCTT
GCGACNCTACTCTACACGATTGACTGAGACAAGTACTGCCTGTCAGACGTGTCTANTNGTCGCCTNTNATCGANTNCNCTACANCTGGNANTNGCGCGCT
TCTCTTANACTGCATTGTCTAANCATACTACGACGCAGTAGCTATNTATGCTNCTTCTCTNGTCTGAATCATATCTCTTGTACTATAGANATAGTTTTAT
TAATCTNCANACACTACACACATACTAAACATACGCTAACCGCTGACACTATCTCTATANAATATGCACTATGACACTCAATCGCTCGCTAGGTCTGATA
TGGCNACTGCATATGCAGACAGNTNGCGATGCCNAGCCGACTCTACTGCTCGGTCATTGTTGCATGCGCTACTGAGNCACAGAGCACTGACCTGCTTACG
CGATGACATTCACATATTGACTGAANTGGCGTTCGTNCATGCTGACNCTAGAACACACCTCACTGAGGAATCACGTTGCAGTGCTCTCCGTCNCGTCGCA
GANGCGTCATCTAATGTATNACACATCGTGTATGTGCATCACTAATAGCAGACGCGCAGTTGTCTTACANATGTCTGATTCGAATGACGCNGCGANGCGA
CCNGAAAATGTCATGCAACGCAAACATTTGTTACNCGTTATATGATTGGTNTGTTGTCATGAACGACGATTACTCTTCACGNTCTAATCTCGAGAGATGT
CGCCTGTTCNTGACTCAGCTGCCACTGCCTCATGTGCTGTGCGCTCCTACCAAACTGTCCGTCATANCCATGTCCTACACTGCAAGACATAACGCTCACG
NTGCTATACCTATCGCTCACTGAATCACTGGATCATGCATGACGCACTTACGTGTATATCTCCGCGGTNATCACGCCATGTTGCGACATATCTCACGACG
TGTGACGACGCATTCTNTGCGGAAGACACACACTCGATGNCTGCCACGTTGCGACTGCGTCGCGTGTNCTNTNCAACACCACTGCTCCACCTCAGACGTC
TTGCACTTGACTCCTATATTGCGAACCTGATATACACAGATTGCNTNCTTNGCATTGCTATTACGTGAGGTTGTGATTGCTCTATGANTNTGAGCNATNC
GCATNACACNTGAANCACGNCGATACACACATTCATANATGCGACACTTGCTTGTCACTGTATACATGTGTNTGTTGATATCTCTCTGCTACGCATGTGC
AACAGACATAACCANACTCTTCTCGCCAGCGTCACTAGCTTCTCTNTGACGCTTTATNTCGNCGTTGTGATCGNATCTGCTGACTGCGTANTGNTTGACT
AATGNCTACACACCCAGCGTCGCCCNATGCANCGATGCGATCTTGCTTCGCTGCCTTGTNAATCGCATATGCTCCGTTGGGTGNGTGTGCACTCTA
>LE_HBa0058J20_SP6_46166 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0058J20
Clone
Clone name
hba-58j20
LE_HBa0058J20
P058J20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found