Clone Read LE_HBa0041K02_T7_43107

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041K02_T7_43107
Primer
T7
ID from Seq. Facility
LE_HBa_041_K02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
628 trimmed for vector and quality, 847 raw
Genbank Accession
DU059389
Sequence
>LE_HBa0041K02_T7_43107 (raw untrimmed)
TAAACCTGGGTCCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCTGAACTTCTTGAAAAATGCTGGCAGCAAGACCCAACACAGAGACCA
GATTTCTCGGAGATTTTGGATATTCTGAAGCAACTAACAAAGGAGGTGGGCATTTTTATTTTATAAGCTTGGTTTTATTTAAGTTTGTTCATTCTTTGAA
CCTAGGTTTGTATGTTTGTAAAAACAGGTTGGAGATGATGGAGAGGACAGACACAAGGACAAATCAATCGGTGGCTTTTTCTCGTCTCTTAGAAAGGGCA
ATCACTGAGAATTTACTAAAAGAGAGGAGGTTGATCGGCCTTCAGCTTTTGTCTCGGTGTACAGATTCTCTGATATCCAAACTTGATCTGATTAGTTTTT
GAAAATCATGGTTTTTATCTAATGTCGCTTGGCATTCATTTACTATTCCTAATTTAGTCAGGGGTGCAAGCTGGTGAGTAAAGCTTTGGCAACTCTCTAC
AGAATAACTGTGAATTTGCGCAAGTTCTAATTCCTAACCCTTTTTTGTACCTTTCTTATTGAGAATTTTCATCCTCTTTATCTGGTTCTAGCCACCAGAT
CATTGCTTCGTAAACCAAGATGTCTATAAAATATAACGATCATCACAATGAATGAGCAAACCCTCTTTCTGCCCCTTGACTAGCTTTCATGTGTATAGAT
AGAATGATTGATATCTTCTTCCATTCGATTTAAGTGAAATTCACGTTTCCCTTATCCTTGGCGTCACTTTACAATATATAACTCTGAAACTTAACTTTTT
TGCTCTAATTATTTTAACTTATTACCTTTTACTTCTTTTATCTAGCA
>LE_HBa0041K02_T7_43107 (trimmed for quality and cloning vector)
AGCTTGCTGAACTTCTTGAAAAATGCTGGCAGCAAGACCCAACACAGAGACCAGATTTCTCGGAGATTTTGGATATTCTGAAGCAACTAACAAAGGAGGT
GGGCATTTTTATTTTATAAGCTTGGTTTTATTTAAGTTTGTTCATTCTTTGAACCTAGGTTTGTATGTTTGTAAAAACAGGTTGGAGATGATGGAGAGGA
CAGACACAAGGACAAATCAATCGGTGGCTTTTTCTCGTCTCTTAGAAAGGGCAATCACTGAGAATTTACTAAAAGAGAGGAGGTTGATCGGCCTTCAGCT
TTTGTCTCGGTGTACAGATTCTCTGATATCCAAACTTGATCTGATTAGTTTTTGAAAATCATGGTTTTTATCTAATGTCGCTTGGCATTCATTTACTATT
CCTAATTTAGTCAGGGGTGCAAGCTGGTGAGTAAAGCTTTGGCAACTCTCTACAGAATAACTGTGAATTTGCGCAAGTTCTAATTCCTAACCCTTTTTTG
TACCTTTCTTATTGAGAATTTTCATCCTCTTTATCTGGTTCTAGCCACCAGATCATTGCTTCGTAAACCAAGATGTCTATAAAATATAACGATCATCACA
ATGAATGAGCAAACCCTCTTTCTGCCCC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961548
Expected error %
0.431182
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g35780.1 Score 55 E Value 3e-12 Identity 67.60% Align. Length 252bp (40.13%) Frame 1
68417.m05080 protein kinase family protein similar to protein kinase [gi:170047] from Glycine max, [gi:13124865] from Arachis hypogaea; contains Pfam protein kinase domain PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ54539.1| Score 59 E Value 7e-12 Identity 76.50% Align. Length 255bp (40.61%) Frame 1
protein kinase [Malus x domestica]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_450193.1| Score 55 E Value 4e-11 Identity 64.70% Align. Length 255bp (40.61%) Frame 1
putative serine/threonine-protein kinase ctr1 [Oryza sativa (japonica cultivar-group)] dbj|BAC79157.1| putative serine/threonine-protein kinase ctr1 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041K02
Clone
Clone name
hba-41k2
LE_HBa0041K02
C02HBa0041K02
P041K02
Clone type
BAC
Contamination
none
Estimated length
108,594
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found