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Clone Read LE_HBa0041A01_T7_42625

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041A01_T7_42625
Primer
T7
ID from Seq. Facility
LE_HBa_041_A01-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
98 trimmed for vector and quality, 730 raw
Sequence
>LE_HBa0041A01_T7_42625 (raw untrimmed)
GTATTTGACTTCGTGATAGCAGGATCCGCTACACGACCGCTCTTTCTGAAGTGGAAACNGTTCTACCTGTCCCACCAGTAGTTGCTCCTTTTCTTTATAA
GAGAGCCAAACAGGTATCTGACGACAAACGTGAAGGCTTCCTGATAAAGGAGTTAGAAAAGATGCTTTCTGCAGAAGGACTATCATCGAACCCCACCGCA
AAAGGTACTTTTTGACTAAAAGTGTCTAATGGAGTATAAAGATGTTGAGATTGTGTTATCTATAATAAATTTTCATTTCAAATGGTATATAACTTCTCCA
CTTGTCTGCTACTTTTACGTTTCTTCCTCTACACTCGCCTTTTTTATCTCTCCTCATAGATCCAGTGGAGGTTCTTTTTATTTTTATCTCTTCTTAACTT
TTTTCCACTTCATATTCTCCTCTACGCTTACCCGGAGATTAAACTAACTGTCGACCCTCCACTGTGGGTGTGTAGATTATTAAGTCTTTCTTCTTTTTTT
TGATTTTTTTTCCTCTATTTCTTTCTTGTGTTTTTTCTTGTTTCCTGTATCTGTTTATTTAGCGTTTCCATCTCTAGTAGGGTTCATTTACATATTTCAA
CATATGTAATTTTCTTTTTTTTTTGTATTTCTTCTTTTATACCTCTTCCTCCTCCGACCCCTCCCCCTCACTTCCTACTCCTACTACTTAGTATTGCTCT
CTTCAGTATCTTCAGTTCTTTGTGCTTCTC
>LE_HBa0041A01_T7_42625 (trimmed for quality and cloning vector)
TCCTTTTCTTTATAAGAGAGCCAAACAGGTATCTGACGACAAACGTGAAGGCTTCCTGATAAAGGAGTTAGAAAAGATGCTTTCTGCAGAAGGACTAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.927738
Expected error %
1.72225
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041A01
Clone
Clone name
hba-41a1
LE_HBa0041A01
P041A01
Clone type
BAC
Contamination
none
Estimated length
75,979
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found