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Clone Read LE_HBa0041A01_SP6_42624

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041A01_SP6_42624
Primer
SP6
ID from Seq. Facility
LE_HBa_041_A01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1288 raw
Sequence
>LE_HBa0041A01_SP6_42624 (raw untrimmed)
GCTACACGCCACGGCACAGCACCACCGGAGCGGGCGACCCAAAGGAGGGCGCGGCAAAACACGCAAGGGAGGGACGCCCACACCCCAAACGACAAACCGA
GAGCACAACCACGGGCGCGCAAAAGCACAGGGACACAAAGAAGAGGTATTTGGAGGGAGACACAAGCACCATAGGGCCGNCAGCGACCAGAGGGCACCAN
GCGCCTTTACTCAGGGCGGCGACGACCACCGGAGGGAGGGAGGCGCACCACACGGAACACCCGAGGCCGGGTCGCACGCGCCACCCAACGTATAGCACGC
CCCAACTCCGCAGTCGTAAACGAAGGGAGCCAGAGAACGCGCACACACGAACACCGAGCATGACCGGATGGACGAGCGCGCAGAGCGCAAATGCAACACC
ACAGGCCAAGCGCACCTCCAAATCACGACACACCGATACGACCCCTCCGCATAGACAGAAGCGGCCAGCACGAAACAACACGCGACTCCACTCACAAGAT
CACCACGGCTCACACGACACACGACACTCCGCACCTCAATACACACACCCCCTACCACCCACATCCAACAACCCGGCGAGAACACCGAACTCCAGAACAC
CCACCAAGACCAGATGTATGCACGACTACCGACATACCGCCGCACAAAGCCCGCACAGACGACCACACGAGACCCACTACCACGCGCACNGCAACACACA
CCAAGAACAGCAGCACTGCTCACAACATCAGACCAACCGGACCACACACACCACCGCACGCCACAACAACCAACTGCGCAACCCCGCAGAGCACAACCAC
CACCACCGACAACACGGAACAAGACAACCACAAACGACACCGTACCACCAACAACCACCAAAGAAGCGGCACACAAACGGCAAACTCAGAACGCCGGCAA
GCGGACCCACGCACCAACACAACTGCCCAACAACAGGAGAGCACCGAAGCGACAAACCACAAGACCCACACGAACAAGAAATAGCAGAGATGGGACAAGG
CTGACAAGCGCGCAGACCAAACACGCGCCCCACAACCCAGCCGAACCCACGAAAGAGCTCGACAATACGCCGTGGCACACACGATGAGGCCGCTCGACAC
AGGGCACGAGGCCAACACGACAGAAACTCACAAACACACGAAATCAACGAAAATCCTCAGTGAAGACAGCGAACGCAGCAACCAAAGCCGCGCAAGGAGA
TAGCAGCCGGCCCAACCGTACCACCACGCACCCCCAACGCACGGCACGAACGAAACGAAACGCACCCGCCACGCCTACACCGCGGAAA
>LE_HBa0041A01_SP6_42624 (trimmed for quality and cloning vector)
GA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.9783
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041A01
Clone
Clone name
hba-41a1
LE_HBa0041A01
P041A01
Clone type
BAC
Contamination
none
Estimated length
75,979
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found