Clone Read LE_HBa0227C18_T7_403271

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0227C18_T7_403271
Primer
T7
ID from Seq. Facility
LE_HBa_227_C18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1632 raw
Sequence
>LE_HBa0227C18_T7_403271 (raw untrimmed)
GGAGCACCCTCCACCAGGATGCTAGCAACCGGGACCAGCGACTAGCGAACACGCGCCCATTAAGACCTGGCACCCTAACCACAAAATGAAGGAGGACCCC
CCCCTATTAAAGAGGGGGCGGGACTACACCAGCATGGATAATAATACGGACACGGACGCAATCAAATGCCAGACGCCCCTTCTTAGACGAAGGGGGACAC
CACGAGCAAAAGAAGCACCGACACAGAATACCGCGCAACCGACGAACAACCGATGCACACTCAAACCACACGGGCAGAATAGAGAAACAACGTAGCCACG
CGACGAACAGCTCAACAAACCGCAGCATGCACACTTCTCACTCGATACACAACAATACAAGCCGTCCACAAAGACCATACACGGAACATAGATGAGATGG
GGCACATACACAACGAAAAACTACCAAAGAGAAACACGCGAACCCACACACTGCACATGAACGCGCCATGACACAGATCGACTGACCAACGACAACACCA
CACGCCAGAAAACATATAAACAATTGATGCTAGCGCACCAGGAGCGAAAGAACAACGGACACGAACGACAAACATTGACAAACAGAGCAAATCGCCAGGA
TCAGCCCCACGCAACAGAGATCCACCAACATGCGAACGACCAGAGACGCCAATACCGCGCACACAAATCGCCAGACAGACTAGAACAGCCTACACCACAG
AACACGTACGCCAACACAACCAGGCGCGTAATAACGTACAAGACCAAACGAATGCACAGCAAGCGGTACTAACCCACTCCAATACAAATCCAACCAAGCA
GCCGCAAACCCGCACCCCAGCTGCACACACGCACACGCGCAAGGAGATAACCTAACACGCAAGAGACGGCGCACTACACCATGCACCATGCAATCAATCA
GCAGCAAATACACCACAATGACAACAAACCAACACACGACCAGCCAACGCAAAGGACCACAAAGCACACGCTGAGAACGAGAACCGCCAACGTCAACAGC
CTTGGCACCAGCACGAACAACAGAAACACAACCACCGCTCAGCAACACAGACTCACACCAGAACACCAAACACTACACCACCACAGCACACACCCAGCAA
ACACGAAATACAGACACACAACGACACCACGCAACCGAGCCCAACATACGCATAGCGCCACAACCGACCACCAACCACAGCAACACCCAAGGACGTCCAA
TCAACAAAGCTGCCAACTCAACGATATCCACACCCAACATCATCCAACACTACTCCACCANAAGCCACCCAACCGCCCCACTCCAACATAAACGTCACAA
CGCAGCGCACAAAACAACCACGCACCACAAACCAGAACCAATCTACAATAATTAACAACACGTACCACAGACATAAACACAGCGCACGAGCAGCGATTAA
CACCGCAAGACACCGTAAACACAACAACGCACACGACGAACACACGAGCCAGATCATACACACATTACCTCACTAGAGCACCACGAACACTGACACATAA
CAGACACCAAAAATAATCAAAGCAGTACCCAACTGATCTCACCACATACACAAGACACTCCCACCCAAATCTACACCAAGCACCATCTCCAAACCCAACA
TCTCAACACACACTAAACGAAACCACAAATAG
>LE_HBa0227C18_T7_403271 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0227C18
Clone
Clone name
hba-227c18
LE_HBa0227C18
P227C18
Clone type
BAC
Contamination
none
Estimated length
108,178
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found