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Clone Read LE_HBa0239E14_T7_399980

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0239E14_T7_399980
Primer
T7
ID from Seq. Facility
LE_HBa_239_E14-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 884 raw
Sequence
>LE_HBa0239E14_T7_399980 (raw untrimmed)
NGGCGCACGCGGGGACTCAGAGTGACCGCAGGCAGCAAGCTTCACCGACAAAAGCCCAAGCTCCATTAAGGGGCACAGAANTANGANAGNGGAAAAAAAA
AGCCCCTTAAGAGGAGNANAAACANTTANNGANNATAANACAGACAAAAAAAGGATAGACCCAAAAGGCAAGAACAAAGTTCCTCCAGAGAACGCAAGAA
TTGTATGAAACAGAAACACAAAACACAGATCAGACGAAGGCTGATCGCATATAAGGATTCAACGAGATAGAGCAGCTATGATGGACTGCAAATATTCAGA
TCGCGGATAAGAAAACGAACAGCGAAAATGTTGAATATACAAAAAACATGGATGAATAATCAAATCAGAACGCAACCTAAGAAAAGACACCTAAATCATA
AGCAGGAAACCTTATTTGAACGTTAAATATCCAAAAGGCATTTTCTAGGGAGCCTAAACTAATATAAGGGAAAGAAACTACAGATGAACCTCAAGATAAC
AACATCACCAGTATGCTTCGAACGGACAAAACCCACTAGAAAAACACTCTACGGGAATTACCATACCGACCAAGAAACACCGGACAAAATAGGAAAATGA
CGCGCAAATAAAAAACTTCTCGTGACTCACCAAAAACACGAGCATCTGAATAACCCCAGTGCGTAGAGTGCACATTGTCCAATGAGACCGAGAGCAGACA
TAACACAATGAAGGCGTCGTCGAATACCGTCACAAAAATAATGGGAAAGGGTGACACAACAAAAGCTGTCAAAAAAATAGAAAGAGGCTCCCCCTGTCGG
GAAAACAAAGAATGCCTGGGGAAAACGATGCTGAATAACAAAAACCTCGACCAAGAAAAAGAAAAGGGGAATAGGCTAATCTAG
>LE_HBa0239E14_T7_399980 (trimmed for quality and cloning vector)
AAGCTTC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.47896
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0239E14
Clone
Clone name
hba-239e14
LE_HBa0239E14
P239E14
Clone type
BAC
Contamination
none
Estimated length
79,218
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found