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Clone Read LE_HBa0239E14_SP6_399978

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0239E14_SP6_399978
Primer
SP6
ID from Seq. Facility
LE_HBa_239_E14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
7 trimmed for vector and quality, 1009 raw
Sequence
>LE_HBa0239E14_SP6_399978 (raw untrimmed)
TACAGAACCATGTTGGAATCTTAAAAACTACCATCAGTATAAGATATCAGAGTGAAACAAGTACCTAAGAGGGGGCCACAANAAAGAAGGAAGAGGAANG
GGACTCTTCTAAGGGAAGCGAGAGCAAACAGGAGAGCATCACCAAAGNAGATCAGNNGACCGGATGACCGACCAACAACCAGTCCCCCAAAGACGAGCCA
AAACGGAGGACAACCCAGGCAGGCCAGAAAGCGAAGGAAGCACGAGAAACGAGGGACGAACACGAAAGACCAGGAACGNCAGGCCGGGAGAAACGAGGGN
NAAGGGNCGCGAACCACAACACAAGACCGAAACCAANAGGGAAAGAAGGGGAACCNCGANAACAGAAAACAGAAGCGGCNGGCACAAAGGAAGACCCNNG
GAGAAGAAGGGCAAAAAGAAACAGAAAACCAAGAAAGGGNAAGGGAGGGCAGAACACAACAGCGAGAGAGNGCCAGAGAAGCCAAGGANGAACCAANAAC
AGCAGANGAGGGCAGAGCANAGGNANCAGCANCGGAGAGGCGGACAGANAGGAACCNGACACCAAGNCGAGAGAAACAAGGAAACCAACAAGCGAAAAGG
GCAAACGAAGAAACCGCGACAAAAACGCCAAACGGGCCAGGAACAAACCGCGCAAAGCCCCCCANAGGCGCCAGCAGAAAACAACACGACGGACCCAGGA
AAACCCGGAAGGAGACGCACCAAGAAAAGGGAGACAGAAAACAACGACCACGCCCCAAAACAAGGAAAAAGGGCCCAAAAAAAACCCCCCACGAACAAAA
CAAAAGAGAACCAAGGGGCGAAAGCAAAAAAGGGGAAAGAACCAAAAGGAAAAAACCGAAAAAAAAAAACGGAGAAACCACGGAAGCAAACCGCCAAAAA
ACCCCCAAAGCAAAGAACGGACCCCCAGGACGAAAAAAAAGGGGGAAAAAAACAAACAAAAAACACGCGAGAAGAACAACGGGGGGCCCAAAAGAAAAAC
AAGGAGAAG
>LE_HBa0239E14_SP6_399978 (trimmed for quality and cloning vector)
GAAACAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.841138
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0239E14
Clone
Clone name
hba-239e14
LE_HBa0239E14
P239E14
Clone type
BAC
Contamination
none
Estimated length
79,218
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found