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Clone Read LE_HBa0222C11_SP6_398607

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0222C11_SP6_398607
Primer
SP6
ID from Seq. Facility
LE_HBa_222_C11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 959 raw
Sequence
>LE_HBa0222C11_SP6_398607 (raw untrimmed)
TCTAGAGGACCGCGGGTACCGAGCTCGATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGG
CGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGC
CTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATG
CCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGAACCCCTTGCGGCCGCATCGAATATAACTTCGTATAAGGTATGCTATACGAAG
GTATTAGCGATGAGCTCGGACTTCCAGTGTTCTTTCCACAGACAACAACAGAGAAAGGAAACGACTGAGGCCGAAAAGCTCGCTTTCAGAACCTGTCGGT
TCATGTCTTTTCAGAGGGTATATTATGTACAAACTTTAACTTATGACGAAAAAAAACGGAAACGCCTTAAGCCGAAAATTTTCGTAAGGAGTGAACATGC
GCCAGGTCACCGCCCTCTAACATGGAAGATCAGCGGAAAGGACCCGTAAAGTGATAATGAATATTATCTACATATCCCCCTGCGCGTGAAGGCCCTTCAG
CCCACGTCCAATAATCAATTGGGAACCCAAGGGTTCGTTTAATTTGAATTGCGTCAACATAACGTAAAAACTAAGTTCAAAGATATCATTTGTCCGAACG
CTAAAATCTCGGGAAACCTAATAGGGCTGAACTTTGCGGGGCATCAAAAACGGGGAACCTACTTGCAAGGGTATTCCGGCCCGGTTTAACCTGGCCGTCC
AGCCCCCTGGTATACCAGATTTTTGTGACCCCCCAAAGCGCTGGGAAAAAAGGTTGTTG
>LE_HBa0222C11_SP6_398607 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for contaminants
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
3' read, no insert found (only flanking vectors)
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0222C11
Clone
Clone name
hba-222c11
LE_HBa0222C11
P222C11
Clone type
BAC
Contamination
none
Estimated length
139,881
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found