Clone Read LE_HBa0115C02_T7_38883

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0115C02_T7_38883
Primer
T7
ID from Seq. Facility
LE_HBa_115_C02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1227 raw
Sequence
>LE_HBa0115C02_T7_38883 (raw untrimmed)
TTTATCCCTCCGGCAGTGTCGACAGAAGCCTCATCTTTGTNAGTATGGCAGTGCGTACTCTCACTATGTATAGCGCAGTGACATAAGATCNGACAACGCT
ATATAGGAGAGATCGATCCTTTACTAGTCGTTGCACACNCTCGCGTACCATCGTGTGCNCAGACGTAGATNCGTGAGAGTCCTATGATGATAGACTTATC
ATGTGTATGTGAGACTATAGCCTCATCTAGGNCTAATACTNAGATACAACACTGCATNGATCAAGCAGAGGGTTATGATGAGATGTGTACTTCTCTNAGT
GTATGCCGCTACACAGATATTATTCTCATTGCTAACACGAGGCGACACCGACATACGCACTCATACGCGTGTTNTGAAGACCTATAGTACATGCTGTATT
CTGCCTTGAAGCACGTCGCGATCATCGAGCGTGCACCGATGTGCGTCGACACGCTGGCANCAGAGGTGAGAGCAGTGCCNGACACGTGCTCAAGCAGAAC
ACGTACTGCGCATTCGCAACGCCGTGGCCTGCTAGTGATACACNCAAGATANGTGTCGAGTAAGCAGATAACTCTCNACTCATCCCAATTCTCGACTAGG
AAATATGCTGCCATACTGTGCNATAGCGATACCAGAATCTCACATACATAGATGTAAACGAACGATAGTATGGATCGTATATTCTGCGTCGTTACATGCT
GGTTTAGGCATGCTTACAATATTACGCGATATGGTANTGAGTATACGNGCATAGAAAGTTGTCTATGCTCATACTTATCTATCTACACGTTGATGATTGT
GATCTGTACCTATATAATATTATATACGTAATGTGCGNGATATGATCTATAACTAACTAACGATACGATGTGAGCAGTGTACTACGTCATGTTCGTGACC
ATCTTGCTGTAGTTTGTGCGGCATCTATCTATAGACATGCTACTCTCAGCAACGCCTGCGTTNGTCTCTCACATATCATTTATCTATGATGTGTATCTAC
ACTGCGAGCGATTGAGAGATGTGGACAGATGCGGACACGATGTAGACATCGCACAGTACATACGACGAAAGAGACATAGATGTAATACAACGATCATCGT
ATCGCATCAACGCGAACGGCCTCTCACCACTAAGACGATATCCTCTCATACACCTGACACACACCTAGCAGACCTCATGGCAGCCGCATATATACAGATA
GGAGAGAGAAACATGCCAATCTATTGT
>LE_HBa0115C02_T7_38883 (trimmed for quality and cloning vector)
GT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.25059
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0115C02
Clone
Clone name
hba-115c2
LE_HBa0115C02
C03HBa0115C02
P115C02
Clone type
BAC
Contamination
none
Estimated length
81,594
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found