Clone Read LE_HBa0115C02_SP6_38882

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0115C02_SP6_38882
Primer
SP6
ID from Seq. Facility
LE_HBa_115_C02-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 910 raw
Sequence
>LE_HBa0115C02_SP6_38882 (raw untrimmed)
GGTCCCCACTCCCATTTGCTCTGTTACGAGGGAGCCTTCTTAACTGCCCGCCATCTAGACACGCAGTGACAACAGTACAACAAGAAGATTAATCCCTGCA
TACGACCCGACTGTGTATGAGCACGGTGCCGGCACCACTGCGCGGACGCCCTTGATCCAGGGGCGTCGTAATCAACTAGTGCAGATGATCAACACTCGTC
TGGACGCTGCGGTGAGTGTGTGGCCTCGGCACATGACATGGCGCGCCGTGCGCTATCATGTGAGCGAAATACGAAGTGTATTCCGCCAACCATGTCTCAC
ATGTCTGCCGTTGGGTGCGACGGGCTTGTCCCACTTACGCGCTACCCGACACTTGTTCTCGTGCTACGTTCCTAACATCC
TATATCACTGCGCCGTCTAT
TCACTCTAATTAATCATCCACCCCTTGCGGATAAGCCACATAGTACCACTGTACAAGTTCACCTATTTTTTGCGCTCTCTCACCTCCACCGCTTCGCCCT
CGACACGCATGTCACACGCGTGCGCAACTGCGATAACGCGACTCCACTCGACTGACCCTACTCACTTCGAGCANCAATCTGTATATATTATAACAGTCAT
CACTGCTATAGATTTACACATGTACAACTCGCTTATCTAGCTCATGCTGTAATTTACATTCTACNAGTTCTTACATCACCAAACACCTCCTACCAATACC
TACAGCACATTGCCAACTTATCTACGTCCAATTCCTACTATGACTCCCTAAACCAGCTAAAGTATGGTAATCACGGACTTACTTTCAAAATGAATATGCA
TATGTCATGCTCTGCGTCAACATACTCAATCTTTACTCTGTCTGTCTCACCACCCGACACCCTCATAACATCTTCTCTTCATGAGACACTCTCCTTATGC
ACTTACGACN
>LE_HBa0115C02_SP6_38882 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.07924
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0115C02
Clone
Clone name
hba-115c2
LE_HBa0115C02
C03HBa0115C02
P115C02
Clone type
BAC
Contamination
none
Estimated length
81,594
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found