Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0220I12_SP6_384795

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0220I12_SP6_384795
Primer
SP6
ID from Seq. Facility
LE_HBa_220_I12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
147 trimmed for vector and quality, 1074 raw
Sequence
>LE_HBa0220I12_SP6_384795 (raw untrimmed)
NNGGTTAGNNNNCCGTATATATGCTCGTCTCGTGATGATTCTCTGCATCCTTCTTGTTCTTTCTATTTTCTTATTCACATTCTCTTTCTTTTACCCTAAT
TAGTATATAATTAAGAATTTTATATGGCAATAATACCCCACTAATTAACTTAGGGTTACCCTCTTTTAACCCCCAAAAATTTGAGTTATTAATATAAACC
CACCAAATCTATAATTAAGGAAGGAATAATCCAAAAACGTCCCTTAAAACCTGTAAAGAAATCCCAATCCGCCTGGGAATTGCGCCACCTGGGACCGGGC
GTCCTGGCTTCCAACGTCCGTCCTGGCAGGCATCCCAAGAGTCAGAAAATCAATTTCCACTGAACAATCTATGAAGGGCCGTCACGCCTGTGACGGTCCG
TCCTGCCATTTCGTCACGAAATTTAAAAAGTCCAATTTCAGTACCCAATTTTCAAATTTCTAAATGTTTTTAAAAGAAACCCTGCGACAGTCCGACGTGG
CCATGACAGATCTTCGTTTGGTACCCCGCCTCAGACAGTTTTTCCGAATTGAAAATTGTTGCTCAAAAACAATGAACGGGTCGTTACCAAAAAAATATCT
ATATAACCCTTTAAAAAAATCAAAAAGTCCAATTATAAGAGGTTAAAAAAATTTTGGATAAAATAGGGTTTTATTTTCAAAGAGTTAGAAATTTGCTACA
CAAAACTTGATTAAGATAACTTTTATTGACTACTTAAAAACGAGAGATATTACGATGCAAATTAAACAATAGAATACTTTAAAATATATAAGCAGTACGA
ATTTCAATGATATAAATAGTAAATTTTAAGTGAAAGGAGCAACGATTATATAAGATAGTTTCGTTTGAAGGATTGTGAAATTTATAAATAAAGAAATATT
TGTTTATTTGAAGGAGGTCAATGAAAAGTTGTAATAATAAAAATAGTAATCGCCTATAATAACAGATAGAACTAGACGGAACATAACGGTGAAAAAAAGA
GTCACAGCTCAAAGTAATCTAGTGGTAGAGAATGAGAATAGACAAATAATATAATTAATAAAGGAAAGTAAGCC
>LE_HBa0220I12_SP6_384795 (trimmed for quality and cloning vector)
CTTCTTGTTCTTTCTATTTTCTTATTCACATTCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATTTTATATGGCAATAATACCCCACTAATTAAC
TTAGGGTTACCCTCTTTTAACCCCCAAAAATTTGAGTTATTAATATA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.832303
Expected error %
1.83609
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0220I12
Clone
Clone name
hba-220i12
LE_HBa0220I12
C02HBa0220I12
P220I12
Clone type
BAC
Contamination
none
Estimated length
71,914
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found