Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0114J11_SP6_38468

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0114J11_SP6_38468
Primer
SP6
ID from Seq. Facility
LE_HBa_114_J11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
11 trimmed for vector and quality, 737 raw
Sequence
>LE_HBa0114J11_SP6_38468 (raw untrimmed)
AGTTTTATATTTCTTTTTGTTCCTTTTATTCTTTAATTATAATTTTCTCGCCGAATTGATTAATAGAGCTATTAATTGTTCGTATTTTTTTATTTGATCA
TTTTGTATTTTATACAAAAAAATGTTACTTTTTGGTTGTGCATAATTTAGAGACACATGGGTTTTTGTCATTTAAAATATAAAATCATACATATTCGTTT
TATTAACAGAATCTTGATTTATCTACTCGACATCGAAGACATACATAAA
ATTGTGTAACGTATCGTTATATAATCTTCCGTTACTGTGAAGGGGCGAATA
CTCTCTAGCTTTGGAGGGACAGGGACACCAATGTCTCATAAGTAATACAGATATAAGGTGCATGCGATTTACTATAGTTTATAGATATATATTATTACTT
TTTTTTCCTGAAAAAATAGTGAATAAGTAGCAAATAATCTAGACAAGTAGTATTTAATAATTTAGAAAAAAGATGACCCATTACTGTTGCTTAATCTTTG
ATATGTTTATAAATTTTTTATATTTTCTTATTTGAGGATATTATATACTATCTAACTCTTTTGTGTATTATTGATATTTGACTTCTATTCCCTACTTATG
TAGTTCTCTTAATGTTATAAATGTTATACAGGTAGTCCCAGCTGTCCGTGAGTTGTATCCACTAGATATATAAGAGAAGCTTAGGAATGGATATTGTTTG
ATACTTCTGATGCTTGTGGAGTTGTTTTATAGTTTTT
>LE_HBa0114J11_SP6_38468 (trimmed for quality and cloning vector)
ATTGTGTAACG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.595176
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0114J11
Clone
Clone name
hba-114j11
LE_HBa0114J11
C03HBa0114J11
P114J11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found