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Clone Read LE_HBa0243H06_SP6_378190

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0243H06_SP6_378190
Primer
SP6
ID from Seq. Facility
LE_HBa_243_H06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
36 trimmed for vector and quality, 933 raw
Sequence
>LE_HBa0243H06_SP6_378190 (raw untrimmed)
GCTCTGTTCGGGGATGCTATCTTTTCTTATTCGAGCTCACTGTTGACTTTAGTAGCTTTAGGAATAATCTTTATTCCGATCTTTTGTACTTTGGAGTACT
TTTTCTTTAAGGCCGATATGACTTATTGACATTTTATTGGCAAAATCCATACTCGTACTCTTTAGATGGTTTTAATATGAGACAAATTTTAGGCTATCAC
TACTTATTGTATATTCATGTTGTTATAACAAAAGCCTAAGTATGATTTTATATGAGAGGTCTATGTATACCTCAATATATGTTAAATATCAATCTCTAAA
TACACTTCATATTGCATTGAAATTTTTAATTTTTTACACTTTTTTAATTGATGACATGTTATGACGAATGCTAATGGCTTGTGTGATTCCTCAGAGAGGA
CGAGGATGCCGTCGCATTTGTGGGTGCTCTCTGGATGTGACATTGTCTTGCCATAACACATGGTTATTATCCATGTGCTAGTCTGAATCACAAGATGAGG
GTCTGCCTAACAACAAGGCCAGAAAGAACGATGTCACTCAAGCTCCTCAAGGTGGTCTATATCCTAAATCTCCAAAGAATAACCCTCCTTATGGGATGGG
GGCTAGGAGAGAGAACTTATCCGGATTTGATATTCTCAGCAAGTATTAACTCTGTATGGTTGTTAGTTTTGCGTGATCAGATCATTTCACTGGGTTTTGT
GCTTTCCTAAGATCAAGACTCTCTTGATAAATTGATCCCAAGGGAGATTCTTGCAATTTCATGCGTGTTTCACCTGTTTGAGAATTCAAGTTCAATGAAA
AAATTTTCAGGTATGATAAAAAACTTCTTCTTTATGAATCAAGGGATTCATTGATTTAAAAATAACATTTATTATCATATCAAAATGCTTTTGAATGTAG
TTTCCCCCCCAAAGAATTAATATAATCTGTGCG
>LE_HBa0243H06_SP6_378190 (trimmed for quality and cloning vector)
ATTTTTAATTTTTTACACTTTTTTAATTGATGACAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.524645
Expected error %
1.11318
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0243H06
Clone
Clone name
hba-243h6
LE_HBa0243H06
C04HBa0243H06
P243H06
Clone type
BAC
Contamination
none
Estimated length
98,771
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found