Clone Read LE_HBa0224I13_SP6_377100

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0224I13_SP6_377100
Primer
SP6
ID from Seq. Facility
LE_HBa_224_I13-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
19 trimmed for vector and quality, 825 raw
Sequence
>LE_HBa0224I13_SP6_377100 (raw untrimmed)
AATTCCTTTAAGGAGNNGGAANNAANNANGANNNAANNANGNAATCCTGNTAGGNAATNGNNNAAANNNNGNNNNNNNAANGNAAANAGNNAAANGNNAN
NNGGGNNAANNNGANANNCCCCAGAAAGGAANAANAGAANGNAANNNGNNGAANAGNNGGAGAGAGGAAANAANAGANAANAAAGGAANAGGGGGGAGGA
NNANANNGNGAGGAAGAAAGAAGGAAAAGAAGAGAAAGGANAAAAAAAGGGGANAGAAAGAAGAGGATTAATTTGATGAGAATTGTTA
GAAGTGAAAAAA
ATTAAATGTGTAATATTTATATGAGNNGGAAGAAGAAGATTTTTTTTTTANAGGAGAAGAGAAAGGNNAAAGGGGGGGGGGGGGGAGGAAAACCCCCCGG
AAAAAGCCCCCCCCCAGGAAGAGAGAGAAGGGAAAAGGAGGGGGGGGGGGGAAAAGAAGAAAAAGAAAGAAAAAGGAGAGAAAAAGGAAAGAAAAAAAAA
AAAGAGGAAAGAAAAAAAGAAAAAAAGAAGGAAAAAGAGAAAAGAAAAAAGAAAAGAAAAAAAAGAAAAGGGAGAAAAAAAGGAGAAAAAAGAGAGAAAA
AGAAGGAAGAAAAGGAGGAAAGAAGAAGAGAAAAGAGAAGAAAAAAAAGAAAAAAAAAGAAAAAGAGAAAGAAAAGAGAGAGGAAAGAGAGAAGAGAGGA
AGAAGAGAAGGAAAAAAGGAAAGAAAGAAAAGGGAGGAAGAGAGAAAAGAAGAGAAGGAAGAAAAAAAAGAAAAGAGAGAGAAAGAAGAAGGAAGAAAAG
GAAAAAGAAGAAGGAGAGAAAGGAA
>LE_HBa0224I13_SP6_377100 (trimmed for quality and cloning vector)
GAAGTGAAAAAAATTAAAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.429613
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0224I13
Clone
Clone name
hba-224i13
LE_HBa0224I13
P224I13
Clone type
BAC
Contamination
none
Estimated length
97,962
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found