Clone Read LE_HBa0113G20_T7_37575

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0113G20_T7_37575
Primer
T7
ID from Seq. Facility
LE_HBa_113_G20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
352 trimmed for vector and quality, 844 raw
Genbank Accession
DU085950
Sequence
>LE_HBa0113G20_T7_37575 (raw untrimmed)
GCTGGGGACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCTTCACATTCGTCCGACCATCCTAATGGAACATTCTGCTTAGTCAAATTT
GTCAATTGGGAAGCAACAGAAGAAAATCCCTAGACAAATCGACGGTAGTAGCTAGCTAAACCAACAAAGCTCCTTACCTCTATAACATTAGTAGTTCTTA
CCCAACTCTTCACTGCTTCAATCTTAGAAGGATCCACCATCACTCCATCTTTACTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAATCTAGCCAAAACTC
ACACTTGGAGAATTTGGCATAAATCCTTTTTCCCCCTCAACACTTCCAATACAAGTTTTCAAATGCTCCTCTTGTTATTTCCTGTTCTTTTAGTATATTA
GTATTTCATCTTTTAATACAATGACAATCGGATCCATACTTGGTTTTATATTACAGATTCATTAGGCTCATGTTAGCTTCTAGGGTATTTGTTATCCATT
TTTGGGATACTCATCTTGTTATAGGCTATTAATATCAGCTATATTTCATCCTGTATATTTATGTTACCATATTCTTAATATATATTTTATTTCCACATAC
TTTGATCTTATCTCTGATTAATAACTGCTATTCACATTATTTCTAGCTTTACATATTCATGTTTCTTTATTATGTCCGTTAATGTTAAATATTATAATTT
TGTATGTGCATAATTATCGTATGTTATTAGTTTCTTTCTTGGTTTATTTTTTTTTTGTTATATTTTTCTATATTTTTTTTTGAATTATTTTACTCAATCT
TATATATCTTATGTGGATCTTTACATTATCAACTTACTTTCATT
>LE_HBa0113G20_T7_37575 (trimmed for quality and cloning vector)
AGCTTTCTTCACATTCGTCCGACCATCCTAATGGAACATTCTGCTTAGTCAAATTTGTCAATTGGGAAGCAACAGAAGAAAATCCCTAGACAAATCGACG
GTAGTAGCTAGCTAAACCAACAAAGCTCCTTACCTCTATAACATTAGTAGTTCTTACCCAACTCTTCACTGCTTCAATCTTAGAAGGATCCACCATCACT
CCATCTTTACTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAATCCTTTTTCCCCCTCAACACT
TCCAATACAAGTTTTCAAATGCTCCTCTTGTTATTTCCTGTTCTTTTAGTAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.932355
Expected error %
2.29232
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 113 E Value 2e-24 Identity 18.90% Align. Length 284bp (80.68%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 110 E Value 2e-23 Identity 18.20% Align. Length 284bp (80.68%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0113G20
Clone
Clone name
hba-113g20
LE_HBa0113G20
P113G20
Clone type
BAC
Contamination
none
Estimated length
72,881
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found