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Clone Read LE_HBa0214K18_SP6_375286

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0214K18_SP6_375286
Primer
SP6
ID from Seq. Facility
LE_HBa_214_K18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1956 raw
Sequence
>LE_HBa0214K18_SP6_375286 (raw untrimmed)
CGCGTCTCTGCGGTGCGAGACAGAGGCTCGACACACAATCGNTGCAACAGAGTGTGTACCGCACGAAGCACAGGTGACGCTGGCAAGACTGAATGAAGAT
ACGTATCGCCCCCCCCTCTCTATTATATAAGANAGAGNAGATGTACACNGTCGANTANTCAACAGTCCTAGTCTANTGTAGAGTAACTATCTTGCTNTGT
GAGATCCTATCAGTATGAGGGGNTACTNGCGCCTACATCTACTGTGTGTAGCGTAGNGCAGCACTCGCCTNGAGAATAGCGATCACACTATNCTAGTAGT
AGTAGTAGAGATAGTATAGTCGTAGTCATGATGACGTGTGCAATTACTGANAAGTGTCTATTACACGGTATATGTAATATATCTGNACTATANTACGCTA
TAGCTGTGCGCATGCNATGAAGACTGATCGTCTGGCACAGATGACTCTGACNTCCTGCGAGCTCGCTGCTCTAACTNCTGAGTCGCNAACATACATGAGC
AATGTGGCTACACGTCTAGCGCTGACGAGGAGTAGCATCGAGCGTCTACTCGTCCAGGAGCAGACAGCTNCATAAATCGCTCTTCATCTCGACCGCTACG
CACCTAATCGTGAACAGNTAGTATAGATGTGTGTAGNGNCTCACGNTCATGAGAGTCTCTCNATGTACACGAGCATGAGCACCNAGCATCATCTACGTNG
CTATGATCGCTGTCGAACAGATCCAACTCGTGACGAACGAGTATCTGATGATNCACTGTATACAAAGCCCTAGTCGCANCTATACGACACGATGATAGAC
TATGACACATCCAATAGATATCGTGCTATCGTCGACGATGTATCGGTCATAGTATTACTGCATGCTATAAGAGATCAGCATGCGTGCCATGGTAGCGCAC
CACGATGCGCATACGTACTATGAGACGCTCAATGCACTGCGCATATGAGTATATAGCGACGCCACTCATCATCGATATCACGAGTGCGCGTGTGCAACTG
ACCCACGACGATGAGCTGTATGCACTGCTGGCGTTGTCTACTGCTGTGACAGTACATGTCTAACGTCGTGTGCATAGATTAAGAGTGTGGTCATCTATAC
ACTCACACTCACGAGCACATGTGAGATGATGTCGATNTGCTCGTCGATGTATGAAGACGACTATAGTTATTCTATCTCCATTGATGAGTACGATGCGTTA
GCTCAGAGTGCGTGGCTAGAGCTCGACGCATATGACGAACTGTAGTGTACATGTACTTGCTGCGTAGNGCTANAATAGTGACGCGCCACGGCATCTGGAC
AACTTGACCTAACATCGTTCTCGTAGTCAGCACCCGCAGGGTGAGCACTAGTGCGCATAGGATAATGGCTAGTCAAACTCATCGACGACGCATGTTCATG
CATGAGAGATGGCNGTGTGAGTAGGCAAGTGTATAGCAGTCTTTGAATGTGCAGTCTTGCACACTGCNTGCTCGGCGTGCATATGAGCACATGACCATGC
AGCACAATAGTACTCTCGGTATAACCTGACATGGACGATTACGTGCACGATCTCGTCGACGCTACGTTATAACTACTATGTGACTCTACGTGCTAGATGC
GCTATTACTGCTGTATGAGTAGCGCTCACCACTCCTCTATCATGGATATCGCAAACAGGATAGTCATGCGNTGACAGGGATAGTCGAACTCTTACGTACT
AGAAGTAAATAGAGCATGCGCATTACCGTANTACGATTGTCTCTATAGTAGATGTACTAATAATATCGCATCTCTCAGTTATGATATTCGTGATAGATAG
CTTGCNTACGACACNGATGATAGGCAATGTACATAGCATCATCATCAGATGTACTCTCTACGAGTACTCTGAACGAGAACGTGGTAGATAAAANCTGTCT
GCGCAGNCTCTCCAATTAGTACNTAACTCANCTCTACGCTTTATGATCTGCAATAC
>LE_HBa0214K18_SP6_375286 (trimmed for quality and cloning vector)
TAC

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.24763
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0214K18
Clone
Clone name
hba-214k18
LE_HBa0214K18
P214K18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found