Clone Read LE_HBa0113B23_SP6_37340

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0113B23_SP6_37340
Primer
SP6
ID from Seq. Facility
LE_HBa_113_B23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
406 trimmed for vector and quality, 697 raw
Genbank Accession
Sequence
>LE_HBa0113B23_SP6_37340 (raw untrimmed)
GAAAGTTATCCGATCCCTTACTCCTTCGTAGATCTGTCGATGTAGGCTCAACGAGGACCAAATCTTCGAAGAATTCTCAAATTCTAATTGTGGTACAATT
TCAGGCGGCAGATCAATGTCGGGAAAATATAAAGTTGGATGACGTTGTTCATACACAAATCTAGGTTTGAACCTGTTAAAATAAGATGATAAATTCTCAA
AAGTAGGAAGAAGAGGAGAAACAGTAGATGAATCAACAATCATAGGAAAGAAATACTAATTCTTAAATAAAACGACATTTCTGGAAATACGAAATTTGTG
AGAACATGGATCATAGCAAATAAAACCTTTTTGTGAAGTAGTATAACCCATAAAAGCTCATTTAGTAGACTGTACATAAATTTTATTGCATTATGAAGTA
GACAAATGCACAAAACAAACATAACCAAATGTATGAAAATCACTATAGTTAGGATTTCGGTTATAAAGACGAATATATGGATATTCAAGATTTGGCACTT
TAGATGGAAATCTATTAATTAAATAGAATATCTGTATACTACGCTTCCCCCCAATATTTAGATATTACAAGAGGAATCGATTAAATAATCTCGTACCAAT
TTTTTAAAAGATGACTATTTCTCTTCGTTTAGCCTCCTCCTTTTAATGTGGTGGTTTTTGGAAAACCCCCCCCTTAAGACAATTTCTTCTATATATT
>LE_HBa0113B23_SP6_37340 (trimmed for quality and cloning vector)
AGGCTCAACGAGGACCAAATCTTCGAAGAATTCTCAAATTCTAATTGTGGTACAATTTCAGGCGGCAGATCAATGTCGGGAAAATATAAAGTTGGATGAC
GTTGTTCATACACAAATCTAGGTTTGAACCTGTTAAAATAAGATGATAAATTCTCAAAAGTAGGAAGAAGAGGAGAAACAGTAGATGAATCAACAATCAT
AGGAAAGAAATACTAATTCTTAAATAAAACGACATTTCTGGAAATACGAAATTTGTGAGAACATGGATCATAGCAAATAAAACCTTTTTGTGAAGTAGTA
TAACCCATAAAAGCTCATTTAGTAGACTGTACATAAATTTTATTGCATTATGAAGTAGACAAATGCACAAAACAAACATAACCAAATGTATGAAAATCAC
TATAGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.931822
Expected error %
0.820597
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89779.1| Score 205 E Value 3e-52 Identity 25.80% Align. Length 383bp (94.33%) Frame 1
gag-pol polyprotein-like [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0113B23
Clone
Clone name
hba-113b23
LE_HBa0113B23
P113B23
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found