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Clone Read LE_HBa0208O14_SP6_371281

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0208O14_SP6_371281
Primer
SP6
ID from Seq. Facility
LE_HBa_208_O14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1553 raw
Sequence
>LE_HBa0208O14_SP6_371281 (raw untrimmed)
TCCGACCTTAATGGCCGTATCTTGCTTTACCGGAGACATATCCACAGCGCAGTTGGAAAACGCCCCCCTTTTTTTATGTAGGGCGCGAACGAAACGTTGA
GAATACACTTGCACTTCTTGAAATAAGGCCACCTTCTAATAGAGCGCTGCCCCTGAACGTGCTCATCGAAAGAGAGGACCACGTACGTACCGACTGCATC
ATGAAGTCGGCCTGACGACTAGGAACGACGATCGACGACAGCCGCAACCGACCTTACACACTTAGTCCTAACAGGTCAGTCTCCATCACTCAACGTGAAG
GTCTTAGCCGAAGCCATACCGTCCCTTATTGACTCATGCGCTCGAGGACAACGGAAGAGTTTACTCGGCAACCACCAGCCAATTAGTGCTGATTCCTAGC
CACCACGACTGCCCATGCACTAGTACTTGATGCCGAGTGTACATAAACATTAATATTTGCTGACCAACCGAGCGACAACTACTCAACCGCTACACCGCCC
TCAACGCACAATATTCTGACCGGCCGTTCTCATTACCAAATTCTTCCACCCACACAGGCGGAAGCTCTAACGCATCTAATCCTCACTACCACTGCAACAC
CTGACAATCTCCCATAGGATCGAATTTGCCCACTCGCTAACTCCCTCTCACCCACATCTAATACGCACTCTAATATGTTTACACTCGACCTTCTACCACT
CCCAAAACCTCCTCAAATGTCTGCTATCCAAATCGCGACTATTCCATCGTCACCACCCTTGTCCCTCGCTCAATGCAACTTCATTTCAACCGCTCTCTCC
ATACCACGCCAACCTCGAATCTCACCACTCTCTCTCACACTCTATCTGACGATCACTCGAAAACAACCGTCACCAGCACACCACGCCGCCCGCCCCCCAC
CCAAGTTAAATACCTCCTTTAGCACTCACATCCTACTACCCCTCATATCACCTACCTTCTGTCAAAATCTGGTATTCTCACTCACCCTACCCATTCCTTC
GGACACTCTCACTCGTCACATAGACCCCACACCGGCTCATTCTCCCCTCCTTCACCGAATCCCTTCACACTGATTACAACACAAACCGCCACGCAACTTT
ACTCACTCCACTCCCCCACTCTCTTGCGCCATCAAATCCGGGAAGCGATATCGTCATACTAACCATCACCCTCCTCCATCCCTGAGTCCTTAACACTTTC
CTTAATTTCTTCCGCGGCATCTACATATCTGTAAACTCTCTCACCTTTCAGTGACTCTATTCTCTCACCGTTGCTACACCGCACTGCACCTTGTCTCTCC
TTCACAAAACTCCATCTGTCTGGAACACCACAGTGCCAAACCCCCTACCTCTTTTTACACATCAAATCTTCACACCCTTCTCACTACGTCTCGGACCGCT
AATCTATCCCTTCTTCTCTCATACATTCATAACTTTTCCACTCCCTACTCATATTCCATCATCCTACACACTACCTCTCGCTCACCTCATTCTCCATCTT
ACACCCTCACCTCCACCCTCTCTGCATTCCCTCTGCACTCTACCTCCTCGACA
>LE_HBa0208O14_SP6_371281 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for contaminants
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.19905
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0208O14
Clone
Clone name
hba-208o14
LE_HBa0208O14
C12HBa0208O14
P208O14
Clone type
BAC
Contamination
none
Estimated length
84,384
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found