Clone Read LE_HBa0112C24_T7_36623

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0112C24_T7_36623
Primer
T7
ID from Seq. Facility
LE_HBa_112_C24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
559 trimmed for vector and quality, 856 raw
Genbank Accession
DU086414
Sequence
>LE_HBa0112C24_T7_36623 (raw untrimmed)
CTTAAAACTGGTCCCCGCGGCACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGGAACAGAGCTCCCAACAAGCATGACCATAAGTAGTAATGTAATT
AATAAGTTTTTCATCTTCTTCAGGAGACCATAAACCTCTCTTCACTTTTTGTTTGTTACAACATGTATGATGCCCCATTTTTTTTTTATAAAAATATACA
AATTAATTACTACTGTAACACTAACAGATTCTACAAATAGACCTCAAATATTGAGTTTGTGTGGAAAGAGAAGTGGAGGGACTCAATGTCTTATATAATA
GATGCTCATGAGAATTGATGAGTACTACAGTACAATAATTTTTTGGATACTAGTAACATCGATAGTGTAAAGAATTTTTTATATTATCGATGTTATAATG
GTAGTTACAGATTCGACAAATATATAATTAAGTTATTTTGAGTTGTACTTATATTAAAAATTCACTTATAGTATTTTCTTTATTTTAATTTGTTCATCTT
GTTTATCTGATTTGACTTGATATGAACTTTAAAAAAATAAAAAGAAATTTTTTAATGTTATAATTTTAAATTAAGAATATGTAAAATATTTTAAAACCTT
CTTTTAATTTTTTGGCCGTTAAAGCATTTTGCGGGCAAACTTAAAATTAAGAGTCATAAAAAAATAAAACTCCAAAACAGACACTCTTTTTGAAACTTAC
TGAAATGGACACAGTAATATATACTTTCCACCCAATGAACTCTTTAAATTTTCCTTATCCATTACGGCTGCAATACCACCGACACCCCGCTAACCTCAAA
ATTCCCCTTCCTCCCCCACCAAACACCACCAAACTACAACACCCACCACCCCACCT
>LE_HBa0112C24_T7_36623 (trimmed for quality and cloning vector)
AGCTTAGGAACAGAGCTCCCAACAAGCATGACCATAAGTAGTAATGTAATTAATAAGTTTTTCATCTTCTTCAGGAGACCATAAACCTCTCTTCACTTTT
TGTTTGTTACAACATGTATGATGCCCCATTTTTTTTTTATAAAAATATACAAATTAATTACTACTGTAACACTAACAGATTCTACAAATAGACCTCAAAT
ATTGAGTTTGTGTGGAAAGAGAAGTGGAGGGACTCAATGTCTTATATAATAGATGCTCATGAGAATTGATGAGTACTACAGTACAATAATTTTTTGGATA
CTAGTAACATCGATAGTGTAAAGAATTTTTTATATTATCGATGTTATAATGGTAGTTACAGATTCGACAAATATATAATTAAGTTATTTTGAGTTGTACT
TATATTAAAAATTCACTTATAGTATTTTCTTTATTTTAATTTGTTCATCTTGTTTATCTGATTTGACTTGATATGAACTTTAAAAAAATAAAAAGAAATT
TTTTAATGTTATAATTTTAAATTAAGAATATGTAAAATATTTTAAAACCTTCTTTTAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.898834
Expected error %
0.866313
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g13890.1 Score 84 E Value 5e-17 Identity 29.70% Align. Length 110bp (19.68%) Frame 2
68416.m01755 myb family transcription factor (MYB26) similar to myb-related transcription factor GI:1167486 from [Lycopersicon esculentum]; contains myb DNA binding domain: PF0049
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g63910.1 Score 79 E Value 1e-15 Identity 27.90% Align. Length 110bp (19.68%) Frame 2
68414.m07236 myb family transcription factor (MYB103) contains Pfam profile: PF00249 myb-like DNA-binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS92347.1| Score 87 E Value 2e-16 Identity 31.50% Align. Length 110bp (19.68%) Frame 2
MYB9 [Gossypium hirsutum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS92346.1| Score 87 E Value 2e-16 Identity 31.50% Align. Length 110bp (19.68%) Frame 2
MYB7 [Gossypium hirsutum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0112C24
Clone
Clone name
hba-112c24
LE_HBa0112C24
C03HBa0112C24
P112C24
Clone type
BAC
Contamination
none
Estimated length
123,800
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found